SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene184647

Length: 268 nt

UniGene Fasta

>sp_v3.0_unigene184647
CAGTCTTGTTAATGTGATGTTCAATGGAATGGCAGAACTGGCTATGACGGTTGTCAGGCTACCAGTATATTACAAGCAAAGAGACTTGCTATTCTACCCTGCTTGGGCATTTTCCTTACCCATTTGGGTGTTGAGAATCCCTTTATCTTTCCTTGAATCGGGGATATGGATCATATTAACATACTATGTCGTAGATTTCGCTCCATCAGCCAGCAGGTTTTTCCGGCAGTTCCTGCTACTTTTCTGGGCACATCAGATGTCCTTGTCA

Ace file of the UniGene sp_v3.0_unigene184647

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Pleiotropic drug resistance protein 2; AltName: Full=NpPDR2 emb\|CAH40786.1\| PDR-like ABC transporter [Nicotiana plumbaginifolia]	-	-	2.0e-32	71%
FL-Next	sp=Pleiotropic drug resistance protein 2; Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco).	-	-	0.0	71%
Sma3	ATP-binding cassette transporter, putative	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	1.12104e-44	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	4.223e-11	-

Source	Gene names
Sma3	ABC; ABC1; At1g15210; At1g15520; At1g59870; At1g66950; At2g26910; At2g29940; At2g36380; At2g37280; At3g16340; At3g53480; B1045F02.15; F12C20.5; F1O11.1; F1O19.3; F23F1.14; F23H11.19; F3G5.7; F4P12.180; F9L1.15; GSVIVT00016813001; GSVIVT00021655001; GSVIVT

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G66950.1	PDR11, ATPDR11 pleiotropic drug resistance 11 chr1:24978239-24984461 FORWARD LENGTH=1454	4.0e-39	71%
RefSeq	Arabidopsis thaliana	NP_176867.2	ABC transporter G family member 39 [Arabidopsis thaliana]	5.0e-39	71%
RefSeq	Populus trichocarpa	XP_002326416.1	predicted protein [Populus trichocarpa]	8.00141e-43	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q2PCF1

Fln msg: Distance to subject end: 789 aas, your sequence is shorter than subject: 89 - 1461

Fln protein: SLVNVMFNGMAELAMTVVRLPVYYKQRDLLFYPAWAFSLPIWVLRIPLSFLESGIWIILTYYVVDFAPSASRFFRQFLLLFWAHQMSLS

Protein Length: 90

Fln nts: CAGTCTTGTTAATGTGATGTTCAATGGAATGGCAGAACTGGCTATGACGGTTGTCAGGCTACCAGTATATTACAAGCAAAGAGACTTGCTATTCTACCCTGCTTGGGCATTTTCCTTACCCATTTGGGTGTTGAGAATCCCTTTATCTTTCCTTGAATCGGGGATATGGATCATATTAACATACTATGTCGTAGATTTCGCTCCATCAGCCAGCAGGTTTTTCCGGCAGTTCCTGCTACTTTTCTGGGCACATCAGATGTCCTTGTCA

Fln Alignment:

AllPine_b_c10713___SLVNVMFNGMAELAMTVVRLPVYYKQRDLLFYPAWAFSLPIWVLRIPLSFLESGIWIILTYYVVDFAPSASRFFRQFLLLFWAHQMSLS
Q2PCF1________________SLINVMFNGMQELAMTVFRLPVFFKQRNSLFYPAWAFALPIWVLKIPISLVESAIWIILTYYTIGFAPAASRFFKQLLAFIGVHQMALS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain