SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene184642

Length: 484 nt

UniGene Fasta

>sp_v3.0_unigene184642
AGGACTCTAGACGTGTACCGGTGTAATATATCATCTCAGGATGCATTAGACTCCATTGGTGAGCAGCAGCTCTGGAAATGTAATGCTACTGTCTATTACGATTTCTACAGCTCAGGTCATTCGTCGATCCTGGGATGTTCTATAGAACAAGCTGATGTTGAGGTTGGAAAAACGCAATATGTTACTAATGATACACAGAGAGATAACAGCTGCTTGTATACGAATTTGTCCCAAATGGAACTCTGGCCGATCATCTTCATGGCGACCGCAAAAACCCCAATGGATTACCATGGAATACCCGTTTGAACATTGCTCTTCAAACTGCCCAGGCCTTGGCTTTCTTCACGGCCTTGATCCGCCTATATTCCACAGAGATGTGAAATCCTCTAATATTCTCTTGGACGAGAATTTGGATATCAAATTGGCTGATTTTGGGCTTTGCAGGCTTGTGCCTGTGGATGCCTCACATGTTACTACCATCCCA

Ace file of the UniGene sp_v3.0_unigene184642

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative receptor-like protein kinase [Oryza sativa Japonica Group] gb\|AAT85182.1\| hypothetical protein [Oryza sativa Japonica Group]	-	-	2.0e-23	61%
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	55%
Sma3	Receptor protein kinase-like	-	-	7.99e-09	-

Source	Gene names
Sma3	AT1G79620; AT5G49760; AT5G49770; At1g18390; At1g79620; At1g79620/F20B17_5; At3g53840; At5g49760; At5g49760/K2I5_13; At5g49780; B1148D12.10; F15H18.11; F15H18.25; F5K20_140; GSVIVT00021376001; GSVIVT00033612001; GSVIVT00035380001; LOC_Os03g21230; LOC_Os10g

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G18390.2	-	6.0e-25	63%
RefSeq	Arabidopsis thaliana	NP_001154349.1	protein kinase domain-containing protein [Arabidopsis thaliana]	8.0e-25	63%
RefSeq	Populus trichocarpa	XP_002322064.1	predicted protein, partial [Populus trichocarpa]	4.0e-26	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: I4DUG4

Fln msg: Overlapping hits, possible frame ERROR between 341 and 329, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 133 aas, your sequence is shorter than subject: 161 - 892

Fln protein: DSRRVPV*YIISGCIRLHW*AAALEM*CYCLLRFLQLRSFVDPGMFYRTS*C*GWKNAICY**YTER*QLLVYEFVPNGTLADHLHGDRKNPNGLPWNTRLNIALQTAxxxxxxHGLDPPIFHRDVKSSNILLDENLDIKLADFGLCRLVPVDASHVTTIP

Protein Length: 162

Fln nts: AGGACTCTAGACGTGTACCGGTGTAATATATCATCTCAGGATGCATTAGACTCCATTGGTGAGCAGCAGCTCTGGAAATGTAATGCTACTGTCTATTACGATTTCTACAGCTCAGGTCATTCGTCGATCCTGGGATGTTCTATAGAACAAGCTGATGTTGAGGTTGGAAAAACGCAATATGTTACTAATGATACACAGAGAGATAACAGCTGCTTGTATACGAATTTGTCCCAAATGGAACTCTGGCCGATCATCTTCATGGCGACCGCAAAAACCCCAATGGATTACCATGGAATACCCGTTTGAACATTGCTCTTCAAACTGCCxxxxxxxxxxxxxxxxxxCACGGCCTTGATCCGCCTATATTCCACAGAGATGTGAAATCCTCTAATATTCTCTTGGACGAGAATTTGGATATCAAATTGGCTGATTTTGGGCTTTGCAGGCTTGTGCCTGTGGATGCCTCACATGTTACTACCATCCCA

Fln Alignment:

AllPine_b_c10696___QLLVYEFVPNGTLADHLHGDRKNPNGLPWNTRLNIALQTAQxxxxLH-GLDPPIFHRDVKSSNILLDENLDIKLADFGLCRLVPVDASHVTT
I4DUG4________________EALVHEYMDCGTLKDHLHGKAKEEKPLDWNTRLNIALQAAExxxxLHQGCNPPIIHRDIKCTNILLDARMNAKVADFGLAKLLDRSQTYVST

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
403	66		33		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain