SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene184547

Length: 486 nt

UniGene Fasta

>sp_v3.0_unigene184547
AGCGCAACACTGTAATTGCCCCAGTAAGCGGGTGGGTTGCCATAAGATTCAGAGCTGACAATCCAGGAGTATGGTTTCTGCACTGCCACCTCGACGACCATTTAACGTGGGGATTGAATATGGTGTTTCTGGTGAGGAACGGCGACAGTCCTTTGGCAACGTTGGAGCCGCCACCTCCAGACCTTCCCCCGTGTTAGAGAATGAGATACTATGAATTGGATCATAAGTTTCAGTTAGTGTGTGATAAGGACTCTGCAAATGCTTTATAAAAACCAGCTGGAAGTACTTGGTAGCAGGAATAAATGCATCTGTATATTGTGTAATGGTGCTCAGAATTTTCCATCTGCAATAAAACCGCGAAAGGTCTGGTGTATGAATAATGAAGCGTAACAATCATTTCTGTAAAATTTTGTACGATACATATGTAGGTGTGGCCGTGTGCTTTGTAACAATCGATCAAATATAAATATATGTTGGTTTTAGACG

Ace file of the UniGene sp_v3.0_unigene184547

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=4 Tax=Populus trichocarpa RepID=B9HHK7_POPTR	-	-	7.0e-16	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Laccase, putative	-	-	7.00649e-45	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	0.0	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	2.273e-38	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		2.273e-38	%
Sma3	Metabolic pathways	01100		2.273e-38	%

Source	Gene names
Sma3	At1g18140; At2g29130; At2g30210; At2g38080; At2g40370; At3g09220; At5g01190; At5g03260; At5g05390; At5g07130; At5g48100; At5g58910; At5g60020; B1026C12.14; B1088C09.5; F15A17_290; F16M14.1; F3L24.9; F7J8.170; GLac1; GLac3; GLac90; GSVIVT00001780001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01190.1	LAC10 laccase 10 chr5:72392-74612 FORWARD LENGTH=558	6.0e-19	74%
RefSeq	Arabidopsis thaliana	NP_195739.2	laccase 10 [Arabidopsis thaliana]	7.0e-19	74%
RefSeq	Populus trichocarpa	XP_002311202.1	laccase [Populus trichocarpa]	8.0e-20	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: your sequence is shorter than subject: 65 - 570

Fln protein: RNTVIAPVSGWVAIRFRADNPGVWFLHCHLDDHLTWGLNMVFLVRNGDSPLATLEPPPPDLPPC*

Protein Length: 66

Fln nts: AGCGCAACACTGTAATTGCCCCAGTAAGCGGGTGGGTTGCCATAAGATTCAGAGCTGACAATCCAGGAGTATGGTTTCTGCACTGCCACCTCGACGACCATTTAACGTGGGGATTGAATATGGTGTTTCTGGTGAGGAACGGCGACAGTCCTTTGGCAACGTTGGAGCCGCCACCTCCAGACCTTCCCCCGTGTTAG___AGAATGAGATACTATGAATTGGATCATAAGTTTCAGTTAGTGTGTGATAAGGACTCTGCAAATGCTTTATAAAAACCAGCTGGAAGTACTTGGTAGCAGGAATAAATGCATCTGTATATTGTGTAATGGTGCTCAGAATTTTCCATCTGCAATAAAACCGCGAAAGGTCTGGTGTATGAATAATGAAGCGTAACAATCATTTCTGTAAAATTTTGTACGATACATATGTAGGTGTGGCCGTGTGCTTTGTAACAATCGATCAAATATAAATATATGTTGGTTTTAGACG

Fln Alignment:

AllPine_b_c10347___RNTVIAPVSGWVAIRFRADNPGVWFLHCHLDDHLTWGLNMVFLVRNG
C0PRA7________________RNTVIAPVSGWVAIRFKADNPGVWFLHCHLDDHLVWGLNMVFIVKNG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
216		50		50	1.0
484	66			33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain