SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene184535

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene184535
GGCACCGCGCCGCTAGAGCCCGCAGTTTTGATACAATGTCGATCGCTGGTCTGTCTGGTGACGCCAAGAAGGGCGAGGCCCTCTTCACTGCCAAGTGCACCCAGTGCCACACCGTTGCCAAGGGTGGCGGCCACAAGCAGGGCCCAACCTCTACGGCCTCTTCGGCCGTGAGACCGGCTCCATGCCCGGCTACCAGTACACCCCCGCCAACAAGAACGCCCACATCATCTGGGGTGAGGAGACCCTCTTCGATTACCTCGAGGATCCCAAGAAGAAGACTCCCCAAGACCAAGATGAACCTTCCCCGGCATCAAGGACAAGCAGGAGCGCGCCGACGTCATCGCCTACCTCAAGGCCGCCACCTCCGCTTAAACGCACGTCTCTTACTAA

Ace file of the UniGene sp_v3.0_unigene184535 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome c n=21 Tax=Euteleostomi RepID=CYC_HUMAN	-	-	3.0e-27	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome c, class IA/ IB	IPR002327	-	-
Sma3	Cytochrome c, class I	IPR003088	-	-
Sma3	Cytochrome c domain	IPR009056	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G10040.1	CYTC-2 cytochrome c-2 chr4:6277083-6278281 FORWARD LENGTH=112	2.0e-25	58%
RefSeq	Arabidopsis thaliana	NP_192742.1	cytochrome c-2 [Arabidopsis thaliana]	3.0e-25	58%
RefSeq	Populus trichocarpa	XP_002327379.1	predicted protein [Populus trichocarpa]	1.0e-26	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKS1

Fln msg: Overlapping hits, possible frame ERROR between 146 and 140, and overlapping frame ERROR between 283 and 283,

Fln protein: MSIAGLSGDAKKGEALFTAKCTQCHTVAKGGGHKxxxxLYGLFGRETGSMPGYQYTPANKNAHIIWGEETLFDYLEDPKKKxxxRPR*TFPGIKDKQERADVIAYLKAATSA*

Protein Length: 114

Fln nts: GGCACCGCGCCGCTAGAGCCCGCAGTTTTGATACA_-_ATGTCGATCGCTGGTCTGTCTGGTGACGCCAAGAAGGGCGAGGCCCTCTTCACTGCCAAGTGCACCCAGTGCCACACCGTTGCCAAGGGTGGCGGCCACAAGxxxxxxxxxxxxCTCTACGGCCTCTTCGGCCGTGAGACCGGCTCCATGCCCGGCTACCAGTACACCCCCGCCAACAAGAACGCCCACATCATCTGGGGTGAGGAGACCCTCTTCGATTACCTCGAGGATCCCAAGAAGAAGACxxxxxxAAGACCAAGATGAACCTTCCCCGGCATCAAGGACAAGCAGGAGCGCGCCGACGTCATCGCCTACCTCAAGGCCGCCACCTCCGCTTAA___ACGCACGTCTCTTACTAA

Fln Alignment:

AllPine_b_c10296___GDAKKGEALFTAKCTQCHTVAKGGGHKQxxNLYGLFGRETGSMPGYQYTPANKNAHIIWGEETLFDYLEDPKKKTxRPR*TFPGIKDKQERADVIAYLKAATSA
A9NKS1________________GDTKVGEKIFKMKCAQCHTVDKGAGHKQxxNLHGLFGRQSGTTAGYSYSAGNKNKAVVWGEDTLYEYLLNPKKYIxGTKMVFPGLKKPQERADLIAYLKQASSS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain