SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene184343

Length: 504 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene184343
AGGGTATCAAGGTCATGGTTAGACTGTCTGTCATCAACCGTGTTGCCACCCCCACCGTTGTCCCCACTGCCTCTGCTTTGATCCTGAAGGAGCTGAAGGAGCCTCCCAGAGACAGAAAGAAGGTGAAGAACATCAAGCACAGTGGTAACGTCACCCTGGATGCCATCATCAACATTGCCAGAATCATGAGATCCAAGTCCATGGCTCGCAAGTTGGTCGGCACTGTCAAGGAGGTGTTAGGCACTGCCTTCGCCATTGGTTGCTCTGTTAACGGCCAGTCCCCTGCTGACATCCAGAAGGAGATTGATGCTGGTACCATCACCATCCCCGACGAATAAACGCTCGGCTTGTGCGATGTAGTACGTTGTTAGATCAGCTTGAGTATTTAATGATGTTAATCAATCTTGAATCTTACTATGGCCTTATGATTCTGCGCTTGTCGTAGCATCCTTACCAGAATGAGAGTTCTCGCATCTGATTAATATTAATTGAAGTTATTTAGTT

Ace file of the UniGene sp_v3.0_unigene184343 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L12, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0ND91_PHYIT	-	-	5.0e-35	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	60S ribosomal protein L12	-	-	7.375e-15	-

Source	Gene names
Sma3	At2g37190; At3g53430; At5g60670; CHLREDRAFT_138697; GSVIVT00018191001; GSVIVT00023193001; MICPUCDRAFT_30629; MICPUN_106714; MUP24.13; MUP24.9; OSJNba0093F12.16; OSTLU_34409; Os02g0699600; Os04g0598200; OsI_08582; OsI_17237; OsJ_08042; OsJ_16016; Ot03g0534

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L11	IPR000911	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60670.1	Ribosomal protein L11 family protein chr5:24381066-24381566 REVERSE LENGTH=166	8.00001e-42	58%
RefSeq	Arabidopsis thaliana	NP_200875.1	60S ribosomal protein L12-3 [Arabidopsis thaliana]	9.99967e-42	58%
RefSeq	Populus trichocarpa	XP_002308123.1	predicted protein [Populus trichocarpa]	5.0e-39	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZX9

Fln msg: your sequence is shorter than subject: 112 - 166

Fln protein: GIKVMVRLSVINRVATPTVVPTASALILKELKEPPRDRKKVKNIKHSGNVTLDAIINIARIMRSKSMARKLVGTVKEVLGTAFAIGCSVNGQSPADIQKEIDAGTITIPDE*

Protein Length: 113

Fln nts: AGGGTATCAAGGTCATGGTTAGACTGTCTGTCATCAACCGTGTTGCCACCCCCACCGTTGTCCCCACTGCCTCTGCTTTGATCCTGAAGGAGCTGAAGGAGCCTCCCAGAGACAGAAAGAAGGTGAAGAACATCAAGCACAGTGGTAACGTCACCCTGGATGCCATCATCAACATTGCCAGAATCATGAGATCCAAGTCCATGGCTCGCAAGTTGGTCGGCACTGTCAAGGAGGTGTTAGGCACTGCCTTCGCCATTGGTTGCTCTGTTAACGGCCAGTCCCCTGCTGACATCCAGAAGGAGATTGATGCTGGTACCATCACCATCCCCGACGAATAA___ACGCTCGGCTTGTGCGATGTAGTACGTTGTTAGATCAGCTTGAGTATTTAATGATGTTAATCAATCTTGAATCTTACTATGGCCTTATGATTCTGCGCTTGTCGTAGCATCCTTACCAGAATGAGAGTTCTCGCATCTGATTAATATTAATTGAAGTTATTTAGTT

Fln Alignment:

AllPine_b_c9529___GIKVMVRLSVINRVATPTVVPTASALILKELKEPPRDRKKVKNIKHSGNVTLDAIINIARIMRSKSMARKLVGTVKEVLGTAFAIGCSVNGQSPADIQKEIDAGTITIPDE
A9NZX9________________GLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNIALDDVIEIARVMKPRSMAKELAGTVKEILGTCLSVGCTVDGKDPKDVQTEIDEGEVEIPEE

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
261		50	50		1.0
262	50			50	1.0
266		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain