SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene184269

Length: 1201 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene184269

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin-protein ligase CIP8 [Arabidopsis thaliana] sp\|Q9SPL2.1\|CIP8_ARATH RecName: Full=E3 ubiquitin-protein ligase CIP8; AltName: Full=COP1-interacting protein 8 gb\|AAD56636.1\|AF162150_1 COP1-interacting protein CIP8 [Arabidopsis thaliana] dbj\|BAA97	-	-	2.0e-26	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%

Source	Gene names
Sma3	At3g19950/MPN9_19; GSVIVT00021348001; GSVIVT00031582001; GSVIVT00033631001; GSVIVT00037060001; MtrDRAFT_AC157503g6v2; Os06g0633500; Os08g0487500; OsI_23805; OsI_29676; OsI_34895; OsI_37259; OsJ_16849; OsJ_27734; P0028A08.16; P0481F05.37; PHYPADRAFT_169900

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3	Domain of unknown function DUF1117	IPR010543	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64920.1	CIP8 COP1-interacting protein 8 chr5:25944338-25945342 REVERSE LENGTH=334	2.0e-31	47%
RefSeq	Arabidopsis thaliana	NP_201297.1	E3 ubiquitin-protein ligase CIP8 [Arabidopsis thaliana]	2.0e-31	47%
RefSeq	Populus trichocarpa	XP_002322048.1	predicted protein, partial [Populus trichocarpa]	1.0e-30	53%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
830	85		14		0.993533
916			20	80	0.999999
917	20		80		0.999999
921	90		10		0.90298
923			90	10	0.90298
927	10	90			0.90298
929		90		10	0.90298
931		90	10		0.90298
934	90	10			0.90298
936	90	10			0.90298
941		10	90		0.90298
1059	10		90		0.90298
1060	10		90		0.90298
1090		10		90	0.90298
1124		80		20	0.995493
1166	25		75		0.996481
1168	25			75	0.99649
1172		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
356	368	GAA GAA GAA GAA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain