SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene184153

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene184153
TGGAAGTTTTCTACTTACAGAAATGGCCTTGATGAAGAATTTGATGTTGGGAGCTGCATTGATGTCAGTTTTGGTGTTACGACTGGCACAAGTAGTAGCCGGTTGGACTGCAGCCCATGCTACATTTTATGGCGGAAGCGACGCCTCTGGAACTATGGGGGGTGCTTGCGGCTATGGCAA

Ace file of the UniGene sp_v3.0_unigene184153

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin n=6 Tax=Pinaceae RepID=Q9SWY1_PINTA	-	-	3.0e-10	56%
FL-Next	tr=Expansin; Pinus taeda (Loblolly pine).	-	-	0.0	56%
Sma3	Expansin	-	-	1.49659e-42	-

Source	Gene names
Sma3	AT1G69530; At1g69530; EXP1; EXP10; EXP11; EXP12; EXP13; EXP18; EXP2; EXP4; EXP5; EXP6; EXP7; EXP8; EXPA1; EXPA10; EXPA13; EXPA3; EXPA4; EXPA5; EXPA7; EXPA8; Exp1; Exp2; Exp3; Exp4; Exp7; GSVIVT00018468001; GSVIVT00021324001; LOC_Os02g16730; LOC_Os02g51040

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G01630.1	ATEXPA17, ATEXP17, ATHEXP ALPHA 1.13, EXPA17 expansin A17 chr4:700653-701527 FORWARD LENGTH=255	9.0e-15	53%
RefSeq	Arabidopsis thaliana	NP_192072.1	putative expansin-A17 [Arabidopsis thaliana]	1.0e-14	53%
RefSeq	Populus trichocarpa	XP_002297611.1	hypothetical protein POPTRDRAFT_547568 [Populus trichocarpa]	7.0e-13	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9SWY1

Fln msg: Distance to subject end: 197 aas, your sequence is shorter than subject: 52 - 253

Fln protein: MALMKNLMLGAALMSVLVLRLAQVVAGWTAAHATFYGGSDASGTMGGACGYG

Protein Length: 53

Fln nts: TGGAAGTTTTCTACTTACAGAA_-_ATGGCCTTGATGAAGAATTTGATGTTGGGAGCTGCATTGATGTCAGTTTTGGTGTTACGACTGGCACAAGTAGTAGCCGGTTGGACTGCAGCCCATGCTACATTTTATGGCGGAAGCGACGCCTCTGGAACTATGGGGGGTGCTTGCGGCTATGGCAA

Fln Alignment:

AllPine_b_c8670___LTEMALMKNLMLGAALMSVLVLRLAQVVAGWTAAHATFYGGSDASGTMGGACGYG
Q9SWY1________________MRSMELVKSIALASLLTFIWLLTGAHGYGGWESAHATFYGGSDASGTMGGACGYG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
76	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain