SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183924

Length: 450 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene183924 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to ribosomal protein S15a n=2 Tax=Hydra magnipapillata RepID=UPI0001924A12	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	Predicted protein	-	-	-

Source	Gene names
Sma3	PHATRDRAFT_23691;

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8	IPR000630	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G59850.1	Ribosomal protein S8 family protein chr5:24112499-24113084 REVERSE LENGTH=130	80%
RefSeq	Arabidopsis thaliana	NP_172256.1	40S ribosomal protein S15a-1 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002304434.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	Probability
82	33		66	0.997476
226	50		50	1.0
268	60		40	1.0
426	25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain