SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183901

Length: 423 nt

UniGene Fasta

>sp_v3.0_unigene183901
CGGTTCATTTCATGATATTGTATATCGCAGGTCGGTGAACCCTATGCAGATCACGATTGCTGGGAGAGACCAGAAGACATGGACACCCCCAGAACAGTTTACAAGATTAACAAAGACAATCCTGGCTCAGAAGTTGCCGCTGAAACAGCTGCAGCATTGGCTGCTGCGTCCATTGTGTTCAGAACATCAGATTTCCAGTATTCCCAGCAGCTTCTCCAAACTGCAGTTCGGTTGTTCGAGTTTGCGGACAAATACAGGGGAGCATATAGTGATGACCCCAGCGTGAGAGCAGCTGTGTGTCCTTTCTACTGCGACTATGATGGATACCAGGATGAATTGCTATGGGGTGCTGCATGGTTGCACAGGGCAACACGGAATAGAGCATATACTCAATACATTCTAGCTAATGGCTTGGCACTTGGA

Ace file of the UniGene sp_v3.0_unigene183901

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64401_PINRA	-	-	2.00386e-43	62%
FL-Next	tr=Endo-beta-1,4-glucanase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	70%
Sma3	Endo-beta-1,4-glucanase	-	-	3.825e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cellulase.	EC:3.2.1.4	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	6J23.18; Al-cel1; At1g02800; At1g19940; At1g22880; At1g23210; At1g48930; At1g64390; At1g70710; At1g71380; At1g75680; At2g32990; At2g44540; At2g44550; At2g44560; At2g44570; At3g43860; At4g02290; At4g09740; At4g11050; At4g23560; At4g38990; At4g39000; At4g39

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	cellulase activity	GO:0008810	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	pattern specification process	GO:0007389	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	cellulose catabolic process	GO:0030245	Biological Process	-
Sma3	cell wall modification involved in multidimensional cell growth	GO:0042547	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	NADH:ubiquinone oxidoreductase, B12 subunit	IPR012576	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G39010.1	AtGH9B18, GH9B18 glycosyl hydrolase 9B18 chr4:18176162-18179102 REVERSE LENGTH=497	66%
RefSeq	Arabidopsis thaliana	NP_568050.1	endoglucanase 24 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002299423.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: O64401

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 224 aas, your sequence is shorter than subject: 141 - 510

Fln protein: RFIS*YCISQVGEPYADHDCWERPEDMDTPRTVYKINKDNPGSEVAAETAAALAAASIVFRTSDFQYSQQLLQTAVRLFEFADKYRGAYSDDPSVRAAVCPFYCDYDGYQDELLWGAAWLHRATRNRAYTQYILANGLALG

Protein Length: 142

Fln nts: CGGTTCATTTCATGATATTGTATATCGCAGGTCGGTGAACCCTATGCAGATCACGATTGCTGGGAGAGACCAGAAGACATGGACACCCCCAGAACAGTTTACAAGATTAACAAAGACAATCCTGGCTCAGAAGTTGCCGCTGAAACAGCTGCAGCATTGGCTGCTGCGTCCATTGTGTTCAGAACATCAGATTTCCAGTATTCCCAGCAGCTTCTCCAAACTGCAGTTCGGTTGTTCGAGTTTGCGGACAAATACAGGGGAGCATATAGTGATGACCCCAGCGTGAGAGCAGCTGTGTGTCCTTTCTACTGCGACTATGATGGATACCAGGATGAATTGCTATGGGGTGCTGCATGGTTGCACAGGGCAACACGGAATAGAGCATATACTCAATACATTCTAGCTAATGGCTTGGCACTTGGA

Fln Alignment:

AllPine_b_c7599___QVGEPYADHDCWERPEDMDTPRTVYKINKDNPGSEVXXXXXXXXXXXSIVFRTSDFQYSQQLLQTAVRLFEFADKYRGAYSDDPSVRAAVCPFYCDYDGYQDELLWGAAWLHRATRNRAYTQYILANGLALG
O64401________________QVGDPNTDHKCWERPEDMDTARTVYKIDSQHPGSDVAAETAAALAAASLVFRKSDPQYSKRLIHTAMRVFDFADKHRGAYSD--SLRSCVCPFYCSYSGYEDELLWGAAWLHKATRNPTYLNYIQSKGQSLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain