SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183836

Length: 310 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene183836
GTTTTTCGACATTTTTAGTTTTTAGGGTCTGAACATTTCAAATCTCGATAATTTCCGTGCCTGGAAACTCTGAGTTTGAAGCTTGGGCAGAATGGGTTCCACAGCTGGCCAGCTGCAGTTGCCGTACACTGGGCCGCCACCGAAGATACTGCACCTTAGTAATTTGCTGTGAGTGTATGGAGAGCTTATCGAACTGGGGAAGTTTTTCGGGAAAATTGTCAATGCCAAGGTCAATGTTGGATCGAATCGCAAACCAGGCGTTCGTCCAATTCGTAAGTTGCAAACTGTGAATTCTCTCGAAACACAATTT

Ace file of the UniGene sp_v3.0_unigene183836 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp\|Q9FGL9.1\|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj\|BAB08421.1\| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb\|AAU90050.1	-	-	1.0e-06	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%

Source	Gene names
Sma3	PHYPADRAFT_130366; PHYPADRAFT_2556;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA11

Fln msg: Distance to subject end: 436 aas, your sequence is shorter than subject: 73 - 511

Fln protein: MGSTAGQLQLPYTGPPPKILHLSNLL*VYGELIELGKFFGKIVNAKVNVGSNRKPGVRPIRKLQTVNSLETQF

Protein Length: 74

Fln nts: GTTTTTCGACATTTTTAGTTTTTAGGGTCTGAACATTTCAAATCTCGATAATTTCCGTGCCTGGAAACTCTGAGTTTGAAGCTTGGGCAGA_-_ATGGGTTCCACAGCTGGCCAGCTGCAGTTGCCGTACACTGGGCCGCCACCGAAGATACTGCACCTTAGTAATTTGCTGTGAGTGTATGGAGAGCTTATCGAACTGGGGAAGTTTTTCGGGAAAATTGTCAATGCCAAGGTCAATGTTGGATCGAATCGCAAACCAGGCGTTCGTCCAATTCGTAAGTTGCAAACTGTGAATTCTCTCGAAACACAATTT

Fln Alignment:

AllPine_b_c7365___MGSTAGQLQLPYTGPPPKILHLSNLL*--VYGELIELGKFFGKIVNAKVNVGSNR
D5AA11________________MGSVAGQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKIVNTKVNVGSNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain