SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183831

Length: 440 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene183831 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L35 n=6 Tax=Spermatophyta RepID=B3TLM6_ELAGV	-	-	6.0e-31	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	60S ribosomal protein L35	-	-	1.903e-18	-

Source	Gene names
Sma3	At2g39390; At3g09500; At3g55170; At5g02610; CHLREDRAFT_147004; F11F8_7; F12L6.5; GSVIVT00029522001; MICPUCDRAFT_49485; MICPUN_107597; OJ1003_F04.3; OJ1126_B06.24; OSJNBb0006N15.8; OSTLU_31613; Os02g0503400; Os04g0376000; OsI_07325; OsI_15569; OsI_15574; O

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L29	IPR001854	-	0.0	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39390.1	Ribosomal L29 family protein chr2:16450803-16451762 REVERSE LENGTH=123	3.0e-39	65%
RefSeq	Arabidopsis thaliana	NP_181471.1	60S ribosomal protein L35-2 [Arabidopsis thaliana]	4.0e-39	65%
RefSeq	Populus trichocarpa	XP_002315252.1	predicted protein [Populus trichocarpa]	4.0e-38	63%

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	G %	T %	Probability
92		50	50	1.0
93		50	25	0.995533
103	33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain