SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183788

Length: 546 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene183788
TGAAGGAAAATGCTGGACTGCCAAGGCTAAAACAGAAGAAGACGTTGTGGAGGCTATTAAAACTTCCCTAGGACCCAAAAAGGATTGCTTATGCTTCATCGAAGTTATTGTACACAAGGATGACACAAGCAAAGAGTTACTTGAGTGGGGCTCCAGAGTTTCGGCAGCAAATGGCAGGCCGCCGAATCCTCAGTAGGCAGGCTTTGAAAAGACGAGCAATTGGAAACATCATCTACGGCTCATGTTTGCAATGTTTTTTGTTCTGTAGGATATCATCCTATATATCTGAATTTGACTTTTCCTAGATCTGGGGTCGATATGTGGCTCTTCACTTGGGCACACCCATACTGCTACTTTTACATGTTTAGCGTCAAGACTGCATGAACAGCCTTAGTCTCTTTTTGCAATATGAACAAAATAACAAATGTTCCTGGTCAGGATATTTAGATCTAGAAGATCTTTAATTGGTGCCTCATATTTATCTAGATTACCAGCAATTATACCACTAAGGGATATGTATATCTATATATATAACTGATTTAATCG

Ace file of the UniGene sp_v3.0_unigene183788 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pyruvate decarboxylase 1 n=1 Tax=Lotus corniculatus RepID=Q84V95_LOTCO	-	-	3.0e-26	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Pyruvate decarboxylase	-	-	1.17e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pyruvate decarboxylase.	EC:4.1.1.1	-	4.90454e-44	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	4.90454e-44	%
Sma3	Metabolic pathways	01100	4.90454e-44	%
Sma3	Biosynthesis of secondary metabolites	01110	4.90454e-44	%

Source	Gene names
Sma3	AT4g33070; At4g33070; At5g01320; At5g01330; At5g54960; GSVIVT00001355001; GSVIVT00024065001; GSVIVT00035905001; OSJNBa0052E20.3; Os01g0160100; Os05g0469800; OsI_00500; OsI_010826; OsI_026469; OsI_11123; OsI_20291; OsI_27437; OsJ_00466; OsJ_10464; OsJ_1887

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	pyruvate decarboxylase activity	GO:0004737	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	carboxy-lyase activity	GO:0016831	Molecular Function	-
Sma3	thiamine pyrophosphate binding	GO:0030976	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Pyruvate decarboxylase/indolepyruvate decarboxylase	IPR012110	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01320.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein chr5:129484-131625 REVERSE LENGTH=603	2.0e-29	82%
RefSeq	Arabidopsis thaliana	NP_195752.1	pyruvate decarboxylase [Arabidopsis thaliana]	2.0e-29	82%
RefSeq	Populus trichocarpa	XP_002322997.1	predicted protein [Populus trichocarpa]	4.0e-29	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRN0

Fln msg: your sequence is shorter than subject: 65 - 409

Fln protein: EGKCWTAKAKTEEDVVEAIKTSLGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANGRPPNPQ*

Protein Length: 66

Fln nts: TGAAGGAAAATGCTGGACTGCCAAGGCTAAAACAGAAGAAGACGTTGTGGAGGCTATTAAAACTTCCCTAGGACCCAAAAAGGATTGCTTATGCTTCATCGAAGTTATTGTACACAAGGATGACACAAGCAAAGAGTTACTTGAGTGGGGCTCCAGAGTTTCGGCAGCAAATGGCAGGCCGCCGAATCCTCAGTAG___GCAGGCTTTGAAAAGACGAGCAATTGGAAACATCATCTACGGCTCATGTTTGCAATGTTTTTTGTTCTGTAGGATATCATCCTATATATCTGAATTTGACTTTTCCTAGATCTGGGGTCGATATGTGGCTCTTCACTTGGGCACACCCATACTGCTACTTTTACATGTTTAGCGTCAAGACTGCATGAACAGCCTTAGTCTCTTTTTGCAATATGAACAAAATAACAAATGTTCCTGGTCAGGATATTTAGATCTAGAAGATCTTTAATTGGTGCCTCATATTTATCTAGATTACCAGCAATTATACCACTAAGGGATATGTATATCTATATATATAACTGATTTAATCG

Fln Alignment:

AllPine_b_c7198___EGKCWTAKAKTEEDVVEAIKTSLGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANGRPPNPQ
C0PRN0________________EGKCWTVKVKTEEEVVEAIKTSLGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANGRPPNPQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
342	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain