SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183731

Length: 511 nt

UniGene Fasta

>sp_v3.0_unigene183731
AGGTCAATACACCGGCCAATCTGTCTGAACTTTATAGATTCCCCAATTTAGTTTCCGTGACACAGATTGGAGCAAGATGTCTTCTGCAATGGATGTGCAGATCGAACAGCTGAGTAGTGCTATTCAGAAGCTCTTGTCCAACGGAATAAACAATCTGAAGGTGCAGGAAAGATATATTCTCCCTCCCCATGAGCGCCCACAGATGTCTCAGATCTCTTACTCTCAGAGCATCCCTCTGATAGACCTAAAAGATCTGGACGGCCCTAACAGAACAACACTAGTCCATCAAATCCGACGAGCATGTGAAGAGGATGGTTTCTTCCAGATAGTGAACCATGGCGTGGCAGAGAATGTCATGGAAAGCATGATGGGGATAGCCAAAGAGTTTTTCGAAATGCCCATTGAAGACCGAGCATGCCTCTACTCAGAGGACACAAAGCAGCCAGTCCGGCTTTCTACAAGCTTCAATATTAGCGAAGACAAGGTTCTCAAATGGATGGACTATCTCACG

Ace file of the UniGene sp_v3.0_unigene183731

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gb\|AAD03425.1\| contains similarity to Iron/Ascorbate family of oxidoreductases (Pfam: PF00671, Score=297.8, E=1.3e-85, N=1) [Arabidopsis thaliana] emb\|CAB40043.1\| putative Fe(II)/a	-	-	3.0e-27	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Chromosome chr2 scaffold_105, whole genome shotgun sequence	-	-	7.291e-06	-

Source	Gene names
Sma3	AT4g10490; AT4g10500; At4g10490; At4g10500; F3H7.16; F3H7.17; F7L13.70; F7L13.80; GSVIVT00000476001; GSVIVT00000477001; GSVIVT00037165001; To43-3rc; VITISV_035675;

Source	GOs	Term	Type	e value	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr4:6491089-6492342 FORWARD LENGTH=349	9.0e-34	47%
RefSeq	Arabidopsis thaliana	NP_192788.1	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]	1.0e-33	47%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMF5

Fln msg: Distance to subject end: 207 aas, your sequence is shorter than subject: 145 - 352

Fln protein: MSSAMDVQIEQLSSAIQKLLSNGINNLKVQERYILPPHERPQMSQISYSQSIPLIDLKDLDGPNRTTLVHQIRRACEEDGFFQIVNHGVAENVMESMMGIAKEFFEMPIEDRACLYSEDTKQPVRLSTSFNISEDKVLKWMDYLT

Protein Length: 146

Fln nts: AGGTCAATACACCGGCCAATCTGTCTGAACTTTATAGATTCCCCAATTTAGTTTCCGTGACACAGATTGGAGCAAG_-_ATGTCTTCTGCAATGGATGTGCAGATCGAACAGCTGAGTAGTGCTATTCAGAAGCTCTTGTCCAACGGAATAAACAATCTGAAGGTGCAGGAAAGATATATTCTCCCTCCCCATGAGCGCCCACAGATGTCTCAGATCTCTTACTCTCAGAGCATCCCTCTGATAGACCTAAAAGATCTGGACGGCCCTAACAGAACAACACTAGTCCATCAAATCCGACGAGCATGTGAAGAGGATGGTTTCTTCCAGATAGTGAACCATGGCGTGGCAGAGAATGTCATGGAAAGCATGATGGGGATAGCCAAAGAGTTTTTCGAAATGCCCATTGAAGACCGAGCATGCCTCTACTCAGAGGACACAAAGCAGCCAGTCCGGCTTTCTACAAGCTTCAATATTAGCGAAGACAAGGTTCTCAAATGGATGGACTATCTCACG

Fln Alignment:

AllPine_b_c6943___MSSAMDVQIEQLSSAIQKLLSNGINNLKVQERYILPPHERPQMSQISYSQSIPLIDLKDLDGPNRTTLVHQIRRACEEDGFFQIVNHGVAENVMESMMGIAKEFFEMPIEDRACLYSEDTKQPVRLSTSFNISEDKVLKWMDYLT
A9NMF5________________MSSATEVQTQELSSIIEKLISNGINNLQVQDRYILPPHERPQMSEISHSECIPVVDLKDLDGPNRTTIVGEIRRACEEDGFFQILNHGVPENVMKSMMGIAKEFYEMPVEDRACFYSEDIKQPVRLSTSFNIGIDGVLNWVDYFS

SNPs (tot: 3)

Position	C %	G %	Probability
103	75	25	0.996475
110	66	33	0.997452
112	50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain