SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183617

Length: 626 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene183617 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADPH:protochlorophyllide oxidoreductase porA (Fragment) n=1 Tax=Pinus strobus RepID=O22599_PINST	-	-	5.0e-30	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	NADPH-protochlorophyllide oxidoreductase	-	-	2.013e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protochlorophyllide reductase.	EC:1.3.1.33	-	2.62043e-43	-

Source	KEGGs	Term	e value	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860	2.62043e-43	%
Sma3	Metabolic pathways	01100	2.62043e-43	%
Sma3	Biosynthesis of secondary metabolites	01110	2.62043e-43	%

Source	Gene names
Sma3	3PCR; AT1G03630; AT5G54190; At1g03630; At4g27440; At5g54190; CHLREDRAFT_136589; CipPor; F21B7.24; F21B7.35; F21B7_11; GSVIVT00025838001; GSVIVT00027634001; H0402C08.17; H0801D08.7; K18G13.7; LOC_Os04g58200; LOC_Os10g35370; LPCR-1; NPR; OSJNBa0017E08.8; OS

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid outer membrane	GO:0009527	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	NADPH dehydrogenase activity	GO:0003959	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protochlorophyllide reductase activity	GO:0016630	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-
Sma3	chlorophyll biosynthetic process	GO:0015995	Biological Process	-
Sma3	photosynthesis, dark reaction	GO:0019685	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Light-dependent protochlorophyllide reductase	IPR005979	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G03630.1	POR C, PORC protochlorophyllide oxidoreductase C chr1:907699-909245 FORWARD LENGTH=401	3.0e-32	86%
RefSeq	Arabidopsis thaliana	NP_001030948.1	protochlorophyllide reductase C [Arabidopsis thaliana]	4.0e-32	86%
RefSeq	Populus trichocarpa	XP_002329146.1	predicted protein [Populus trichocarpa]	3.0e-33	88%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
275		85	14		0.993533
276	85		14		0.993533
278		14	85		0.993533
279		85		14	0.993533
336	16	83			0.994512
420		80		20	0.995493
475		40	60		1.0
476		60		40	1.0
478			40	60	1.0
520		28		71	1.0
523	71		28		1.0
525		66		33	1.0
528		66		33	1.0
529	33		66		1.0
547	71		28		1.0
570		60		40	1.0
574		40	60		1.0
604		25		75	0.996483

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain