SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183425

Length: 566 nt

UniGene Fasta

>sp_v3.0_unigene183425
TATACGGCACATATATAACTTACATTATTTGAATTGAGACTTTTGCTAAATACTATATATTCCACTTCCACTTTTAATCTTAATACGAAAAGAAGAAATAGCTGCTGACCATGTCCAGTGCCATTTCAAAGAAGCGAAAATTTGTCAATCGCGGCGTCTTCAAGGCCGAGCTCAACGAGTTCTTCACCAAGGAGCTCGCCGAAGACGGCTACAGTGGTGTTGAGGTGCGCGTCACGCCCACCCGCACCGAGATCATCATCTTGGCCACCAAGACCCAGCAAGTCCTGGGCGAGAAGGGCAGACGCATACGCGAGCTCACCTCCGTCGTGCAGAAGCGCTTCGATTTTGATGACGACACAGTCGAGTTGTATGCCGAGAAGGTTGGAACAAGAGGTCTTTGCGCCGTTGCTCAAGCTGAATCGCTCAAATCAAATTGCTTGGTGGTCTTCCAGTTCGCAGGGCCTGCTACAGTGTTCTTCGTTTTGTCATGGAATCAGGCGCCAAGGGCTGCGAGATCGTCGTGTCGGGCAAGCTGCGCGGCCAGCGTGCCAAGGCCATGAAGTTCG

Ace file of the UniGene sp_v3.0_unigene183425

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S3 n=1 Tax=Xenopsylla cheopis RepID=A2IA98_9NEOP	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Putative 40S ribosomal protein	-	-	3.131e-07	-

Source	Gene names
Sma3	AT5G35530; At2g31610; At3g53870; At5g35530; CHLREDRAFT_134051; F5K20_170; GSVIVT00014707001; GSVIVT00016476001; GSVIVT00020378001; GSVIVT00020382001; GSVIVT00032258001; GSVIVT00032259001; GSVIVT00034104001; LOC_Os03g38000; MICPUCDRAFT_26239; MICPUN_91459;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	pyruvate kinase activity	GO:0004743	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	Pyruvate kinase	IPR001697	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Ribosomal protein S3, eukaryotic/archaeal	IPR005703	-	-
Sma3	CRM1 C-terminal domain	IPR014877	-	-
Sma3	Pyruvate kinase, alpha/beta	IPR015794	-	-
Sma3	K homology domain-like, alpha/beta	IPR015946	-	-
Sma3	Ribosomal protein S3, conserved site	IPR018280	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G35530.1	Ribosomal protein S3 family protein chr5:13710355-13712192 REVERSE LENGTH=248	77%
RefSeq	Arabidopsis thaliana	NP_198403.1	40S ribosomal protein S3-3 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002308530.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR91

Fln msg: Overlapping hits, possible frame ERROR between 440 and 431, Distance to subject end: 81 aas, your sequence is shorter than subject: 152 - 233

Fln protein: MSSAISKKRKFVNRGVFKAELNEFFTKELAEDGYSGVEVRVTPTRTEIIILATKTQQVLGEKGRRIRELTSVVQKRFDFDDDTVELYAEKVGTRGLCAVAQAESLKxxxxxGLPVRRACYSVLRFVMESGAKGCEIVVSGKLRGQRAKAMKF

Protein Length: 153

Fln nts: TATACGGCACATATATAACTTACATTATTTGAATTGAGACTTTTGCTAAATACTATATATTCCACTTCCACTTTTAATCTTAATACGAAAAGAAGAAATAGCTGCTGACC_-_ATGTCCAGTGCCATTTCAAAGAAGCGAAAATTTGTCAATCGCGGCGTCTTCAAGGCCGAGCTCAACGAGTTCTTCACCAAGGAGCTCGCCGAAGACGGCTACAGTGGTGTTGAGGTGCGCGTCACGCCCACCCGCACCGAGATCATCATCTTGGCCACCAAGACCCAGCAAGTCCTGGGCGAGAAGGGCAGACGCATACGCGAGCTCACCTCCGTCGTGCAGAAGCGCTTCGATTTTGATGACGACACAGTCGAGTTGTATGCCGAGAAGGTTGGAACAAGAGGTCTTTGCGCCGTTGCTCAAGCTGAATCGCTCAAAxxxxxxxxxxxxxxxGGTCTTCCAGTTCGCAGGGCCTGCTACAGTGTTCTTCGTTTTGTCATGGAATCAGGCGCCAAGGGCTGCGAGATCGTCGTGTCGGGCAAGCTGCGCGGCCAGCGTGCCAAGGCCATGAAGTTCG

Fln Alignment:

AllPine_b_c5311___MSSAISKKRKFVNRGVFKAELNEFFTKELAEDGYSGVEVRVTPTRTEIIILATKTQQVLGEKGRRIRELTSVVQKRFDFDDDTVELYAEKVGTRGLCAVAQAESLKSxxxGGLPVRRACYSVLRFVMESGAKGCEIVVSGKLRGQRAKAMKF
A9NR91________________MAKQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPEGTVELYAEKVNNRGLCAIAQAESLRYxxxGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKF

SNPs (tot: 3)

Position	C %	G %	T %	Probability
117	75	25		0.996473
312	80		20	0.995498
343		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain