SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183398

Length: 207 nt

UniGene Fasta

>sp_v3.0_unigene183398
AACTAAGGTCCATAGAAACAACACAGATCAGAAATGACTATCCTTCCTACCCTGAGCCTGAACACCAAATTCTTCAATCGTATTCACACTATTCATCCATATCCTTCCATTCAAATCTCATTTACAGTCTGCCAGCCGAATTCATGCATTCTCCCACAACAACACAACCAACTTCCTACCTCCATAACAATTTCAAATCATAGAAAA

Ace file of the UniGene sp_v3.0_unigene183398

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	9.0e-18	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	0.0	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYW5

Fln msg: Distance to subject end: 273 aas, your sequence is shorter than subject: 58 - 332

Fln protein: MTILPTLSLNTKFFNRIHTIHPYPSIQISFTVCQPNSCILPQQHNQLPTSITISNHRK

Protein Length: 59

Fln nts: AACTAAGGTCCATAGAAACAACACAGATCAGAA_-_ATGACTATCCTTCCTACCCTGAGCCTGAACACCAAATTCTTCAATCGTATTCACACTATTCATCCATATCCTTCCATTCAAATCTCATTTACAGTCTGCCAGCCGAATTCATGCATTCTCCCACAACAACACAACCAACTTCCTACCTCCATAACAATTTCAAATCATAGAAAA

Fln Alignment:

AllPine_b_c5151___MTILPTLSLNTKFFNRIHTIHPYPSIQISFTVCQPNSCILP-QQHNQLPTSITISNHRK
A9NYW5________________MGFLPMLSLNTKYFNPVHTIHSYPSIQISFTVSQLNSCLLPRQQHNQLPDSITISNHGK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
51		60	40		1.0
70		20		80	0.995494
99	75		25		0.996473
198		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain