SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183370

Length: 523 nt

UniGene Fasta

>sp_v3.0_unigene183370
AAATGTCGTTGTGCAGACAAAACTTCGCTGCTGCTGCCGAACAAGGAATCAACGATCAGATCAATGCCGAATTGACTGCTTCCCATGTCTATCAGTCAATGGCTGCCTACTTCGATCGTGAGGATGTTGCCCTCCCAGGATTTAGAGACTTTTTCCAAAAATCATCCGATGAGGAAAGAGAGCATGCCCAGAAGCTCATAAAGTATCAGAACAAGAGAGGTGGTCGTGTTGTTCTGAGAGATATTGCTGCTCCTCCTCAAGCCTGGAACTCTCCTCTTGAAGCTCTCGAAGCTGCCCTCACTCTTGAAAGAACTGTCAATGAGAAGCTCTTGAAGCTCCACAAGATTGCTGAAGAAGCCGGTGATCCTCAAATGACTGACTTCATCGAAGGTGAATTCCTCGAAGAACAAGTTGAAGCCATCAAAGCCCTGGCTGATCATATCACCAACCTTAAGAGAGTCGGAAACGGCCTTGGTGTGTATCTTTTCGACAAGAACTTCAAATAAATGTAGGATAGCAGCGC

Ace file of the UniGene sp_v3.0_unigene183370

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ferritin n=1 Tax=Tegillarca granosa RepID=D3JCC5_TEGGR	-	-	60%
FL-Next	sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Sma3	Ferritin	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ferroxidase.	EC:1.16.3.1	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Porphyrin and chlorophyll metabolism	00860		0.0	%

Source	Gene names
Sma3	AT3g56090/F18O21_50; At2g40300; At3g11050; At3g56090; At5g01600; CHLREDRAFT_206372; F11B9.26; F18O21_50; F7A7.120; F9F8.13; FER; FER1; FER2; FER3; FER4; FTN; Fer1; Fer2; Fer3; Fer4; GSVIVT00001284001; GSVIVT00024034001; GSVIVT00029357001; GSVIVT0003738700

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	ferroxidase activity	GO:0004322	Molecular Function	-
Sma3	ferric iron binding	GO:0008199	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	response to reactive oxygen species	GO:0000302	Biological Process	-
Sma3	iron ion transport	GO:0006826	Biological Process	-
Sma3	cellular iron ion homeostasis	GO:0006879	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	response to iron ion	GO:0010039	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	Ferritin	IPR001519	-	-
Sma3	Ferritin/DPS protein domain	IPR008331	-	-
Sma3	Ferritin- like diiron domain	IPR009040	-	-
Sma3	Ferritin-related	IPR012347	-	-
Sma3	Ferritin, conserved site	IPR014034	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G01600.1	ATFER1, FER1 ferretin 1 chr5:228149-229594 REVERSE LENGTH=255	52%
RefSeq	Arabidopsis thaliana	NP_195780.1	ferritin heavy chain [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002323610.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPN3

Fln msg: your sequence is shorter than subject: 168 - 266

Fln protein: MSLCRQNFAAAAEQGINDQINAELTASHVYQSMAAYFDREDVALPGFRDFFQKSSDEEREHAQKLIKYQNKRGGRVVLRDIAAPPQAWNSPLEALEAALTLERTVNEKLLKLHKIAEEAGDPQMTDFIEGEFLEEQVEAIKALADHITNLKRVGNGLGVYLFDKNFK*

Protein Length: 169

Fln nts: AAATGTCGTTGTGCAGACAAAACTTCGCTGCTGCTGCCGAACAAGGAATCAACGATCAGATCAATGCCGAATTGACTGCTTCCCATGTCTATCAGTCAATGGCTGCCTACTTCGATCGTGAGGATGTTGCCCTCCCAGGATTTAGAGACTTTTTCCAAAAATCATCCGATGAGGAAAGAGAGCATGCCCAGAAGCTCATAAAGTATCAGAACAAGAGAGGTGGTCGTGTTGTTCTGAGAGATATTGCTGCTCCTCCTCAAGCCTGGAACTCTCCTCTTGAAGCTCTCGAAGCTGCCCTCACTCTTGAAAGAACTGTCAATGAGAAGCTCTTGAAGCTCCACAAGATTGCTGAAGAAGCCGGTGATCCTCAAATGACTGACTTCATCGAAGGTGAATTCCTCGAAGAACAAGTTGAAGCCATCAAAGCCCTGGCTGATCATATCACCAACCTTAAGAGAGTCGGAAACGGCCTTGGTGTGTATCTTTTCGACAAGAACTTCAAATAA___ATGTAGGATAGCAGCGC

Fln Alignment:

AllPine_b_c4971___SLCRQNFAAAAEQGINDQINAELTASHVYQSMAAYFDREDVALPGFRDFFQKSSDEEREHAQKLIKYQNKRGGRVVLRDIAAPPQAWNSP-----XXXXXXXXXXXRTVNEKLLKLHKIAEEAGDPQMTDFIEGEFLEEQVEAIKALADHITNLKRVGNGLGVYLFDK
B8LPN3________________SFARQRFEDACEAALNEQINVEYNVSYIYHALFAYFDRDNVGLPGFAKYFKEASDEERNHAEMLMKYQNTRGGKVKFQSILMPLMEFDHPEKGDALYAMELALSLEKLTNEKLLSLHSVAQQCNDAQMTDYIEGSFLAEQVQAIKQVSEYVAQLRRIGKGHGIWHFDQ

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
275		40		60	1.0
284		40		60	1.0
285		60		40	1.0
296		60		40	1.0
314		50		50	1.0
320		50		50	1.0
326	50		50		1.0
360	50		50		1.0
361	50		50		1.0
362		50		50	1.0
377		50		50	1.0
395	66		33		0.997458
401		66		33	0.997454
404	66		33		0.997456
407	66		33		0.997458
417	33		66		0.997459
418		66	33		0.997459
422		66		33	0.997461
425	66		33		0.997457
426			66	33	0.997456
440		33		66	0.997464
453	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain