SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183309

Length: 395 nt

UniGene Fasta

>sp_v3.0_unigene183309
ACCAGTAATGTATCCAGTGACGAGTGCTGTTACTCGTCGCTAAACGATTCATTCCTTGACTTGTGGAGACAGTTAAGGACGTTAGTTAGATACACCATTTTCAGGGTCGTAATAATGTCATTGCAGGCAGTATGTCCGTTCAGGCTTGTTTTTCTAATCTCATTTGTTGCTTGTTTGGCTGCCATCACAAACGCAGATGTCCACAGATATACCTTTATTGTTGAAGAGAAGAATATCACGAGGCTATGCAAGACGTATGGATTAGTCGTCGTCAATGGACAGCTACCAGGCCCAACCATTCATGTACGGAATGGGGACAGTCTTATAGTTAAAGTTTATAACAGAGGCAAGTACAATGCCACTATTCACTGGCATGGAGTGAGGCAGCTGCGTAC

Ace file of the UniGene sp_v3.0_unigene183309

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	2.0e-22	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Chromosome undetermined scaffold_92, whole genome shotgun sequence	-	-	4.398e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	1.832e-09	-

Source	Gene names
Sma3	B1088C09.5; GSVIVT00010246001; GSVIVT00010248001; GSVIVT00010254001; GSVIVT00021432001; GSVIVT00038326001; GSVIVT00038352001; GSVIVT00038355001; GSVIVT00038359001; GSVIVT00038364001; LAC15; LAC3; LOC_Os01g61160; LOC_Os10g20610; Lac1; Lac4; OSJNBa0045C13.1

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315131.1	laccase 90c [Populus trichocarpa]	5.0e-25	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: Distance to subject end: 474 aas, your sequence is shorter than subject: 93 - 570

Fln protein: MSLQAVCPFRLVFLISFVACLAAITNADVHRYTFIVEEKNITRLCKTYGLVVVNGQLPGPTIHVRNGDSLIVKVYNRGKYNATIHWHGVRQLR

Protein Length: 94

Fln nts: ACCAGTAATGTATCCAGTGACGAGTGCTGTTACTCGTCGCTAAACGATTCATTCCTTGACTTGTGGAGACAGTTAAGGACGTTAGTTAGATACACCATTTTCAGGGTCGTAATA_-_ATGTCATTGCAGGCAGTATGTCCGTTCAGGCTTGTTTTTCTAATCTCATTTGTTGCTTGTTTGGCTGCCATCACAAACGCAGATGTCCACAGATATACCTTTATTGTTGAAGAGAAGAATATCACGAGGCTATGCAAGACGTATGGATTAGTCGTCGTCAATGGACAGCTACCAGGCCCAACCATTCATGTACGGAATGGGGACAGTCTTATAGTTAAAGTTTATAACAGAGGCAAGTACAATGCCACTATTCACTGGCATGGAGTGAGGCAGCTGCGTAC

Fln Alignment:

AllPine_b_c4597___LVFLISFVACLAAITNADVHRYTFIVEEKNITRLCKTYGLVVVNGQLPGPTIHVRNGDSLIVKVYNRGKYNATIHWHGVRQLR
C0PRA7________________LVFLFTFAAYLAAIINAEIHHYTFVIERTIVTRLCKNYTIVTVNGQLPGPTIHVHNGDTVIVKAYNRAQHNATLHWHGVKQLR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
43	75		25		0.996473
66		25	75		0.996473
68	75		25		0.996473
70	80			20	0.9955
97		80		20	0.995505
134			25	75	0.996473
140		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain