SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183248

Length: 908 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene183248

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dihydropinosylvin synthase n=6 Tax=Pinus RepID=DPSS_PINSY	-	-	98%
FL-Next	tr=Pinosylvin synthase; Pinus densiflora (Japanese red pine).	-	-	98%
Sma3	Chalcone synthase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Naringenin-chalcone synthase.	EC:2.3.1.74	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Flavonoid biosynthesis	00941	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	C2; CHS; CHS-1A; CHS-1B; CHS-A; CHS-C; CHS-D; CHS-DII; CHS-DIII; CHS-DIV; CHS-LF1; CHS-LF2; CHS-LF3; CHS-LF4; CHS-P; CHS1; CHS11; CHS17; CHS1A; CHS1B; CHS2; CHS3; CHS4; CHS4-1; CHS4-2; CHS5; CHS6; CHS6-4; CHS7; CHS8; CHS9; CHSA; CHSD; CHSI; CHSII; CHSJ; C

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3		GO:0008415	Molecular Function	-
Sma3	naringenin-chalcone synthase activity	GO:0016210	Molecular Function	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chalcone/stilbene synthase, N-terminal	IPR001099	-	-
Sma3	Polyketide synthase, type III	IPR011141	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Chalcone/stilbene synthase, active site	IPR018088	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13930.1	CHS, TT4, ATCHS Chalcone and stilbene synthase family protein chr5:4488762-4490035 FORWARD LENGTH=395	68%
RefSeq	Arabidopsis thaliana	NP_196897.1	chalcone synthase [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002337752.1	chalcone synthase [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9MBF1

Fln msg: your sequence is shorter than subject: 277 - 393

Fln protein: QSKSRITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCLVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDKTRKASLQNCCSTSGEGLEMGVLFGFGPGLTIETVVLKSVPFNKFNN*

Protein Length: 278

Fln nts: GCAGTCCAAGTCTCGGATCACTCATCTCATATTTTGCAGCACAACGACTCCGGATCTACCCGGAGCAGACTTTGAGGTAGCCAAGTTGCTGGGGCTGCACCCGAGTGTGAAGAGAGTGGGCGTGTTCCAACATGGCTGCTTCGCCGGAGGCACCGTTCTTCGAATGGCGAAAGACCTTGCCGAAAACAATCGAGGAGCTCGGGTGCTGGTCATCTGCAGTGAAACCACCGCCGTCACCTTCCGTGGACCCTCCGAGACTCACCTGGACAGCTTGGTGGGGCAAGCTCTGTTCGGCGACGGTGCTTCTGCCCTCATCGTGGGAGCTGATCCCATCCCTCAAGTGGAGAAGGCCTGTTTCGAAATCGTTTGGACAGCCCAGACAGTTGTTCCCAACAGCGAGGGAGCCATCGGTGGGAAGGTGAGAGAGGTCGGACTGACCTTCCAACTCAAAGGCGCGGTTCCGGATCTAATCTCTGCCAACATTGAAAACTGTCTGGTGGAGGCGTTCAGTCAATTCAAAATATCCGATTGGAACAAGTTGTTCTGGGTTGTTCATCCCGGAGGACGTGCCATCCTTGATCGGGTGGAGGCCAAGCTCAATCTGGATCCCACAAAACTGATACCCACCAGGCACGTTATGAGCGAGTATGGAAACATGTCCAGTGCATGTGTCCACTTCATATTGGATAAGACGAGGAAGGCTTCTCTACAAAACTGTTGTTCAACCAGCGGAGAAGGATTGGAAATGGGAGTTCTGTTCGGATTCGGGCCGGGCCTCACCATTGAAACAGTGGTTCTCAAGAGCGTTCCCTTCAATAAATTTAACAACTAA___GCTTTGAGACATAGTTGCCACATCTAAGCTTTAGAATAAATGTAAGCATTGCCATAGAGTGTTTCTGCAACTAGTA

Fln Alignment:

AllPine_b_c4214___QSKSRITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPNSEGAIGGKVREVGLTFQLKGAVPDLISANIENCLVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDKTRKASLQNCCSTSGEGLEMGVLFGFGPGLTIETVVLKSVP
Q9MBF1________________QSKSRITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTVVPDSEGAIGGKVREVGLTFQLKGAVPDLISANIENCLVEAFSQFKISDWNKLFWVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTRKASLQNGCSTSGEGLEMGVLFGFGPGLTIETVVLKSVP

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
431		80		20	0.995493
455		80		20	0.995505
470	80			20	0.995505
494		20		80	0.995505
495		80		20	0.995505
506	20		80		0.995505
530		25		75	0.99649
591			66	33	0.997476
599		66		33	0.997455
605		33	66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain