SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene183051

Length: 740 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene183051 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S18 n=9 Tax=sordariomyceta RepID=A4RPY6_MAGO7	-	-	0.0	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	40S ribosomal protein S18	-	-	8.064e-12	-

Source	Gene names
Sma3	CHLREDRAFT_155649; GSVIVT00019990001; GSVIVT00023737001; GSVIVT00031714001; LOC_Os03g58050; MICPUCDRAFT_49747; MICPUN_109369; OJ1656_E11.104; OJ1656_E11.108; OJ1656_E11.114; OSJNBb0021G19.20; OSJNBb0060J21.1; OSTLU_29591; Os03g0794700; Os07g0173500; Os07g

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S13	IPR001892	-	0.0	-
Sma3	Ribosomal protein S13, conserved site	IPR018269	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G09800.1	RPS18C S18 ribosomal protein chr4:6173818-6174963 FORWARD LENGTH=152	70%
RefSeq	Arabidopsis thaliana	NP_564434.1	40S ribosomal protein S18 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002306780.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
74		66	33		0.997456
243	57		42		1.0
303	57		42		1.0
312	42		57		1.0
321	42		57		1.0
360	57		42		1.0
363		42		57	1.0
396	42		57		1.0
426	57		42		1.0
432	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain