SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene182969

Length: 337 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene182969
TACCTGAAGGTCACTGCTGGGTTGAAGGAGACAATGCAGTTTCCAGCTTGGACTCCAGATCATTTGGGCCAGTTCCATTGGGTTTAGTGCAGGGCAGGGTTACTCATGTTATCTGGCCTCCTGAAAGAGTTGGTGCAATAGAGAAACGATATCCCAAGGAACGTGTCTCATCCTATTGACATAATGGCCTGGCAAGACCAAGATAATTTTCAGTTTTAATTTTCAACCCTTTATATAGTCATAAGCTTGACACAAATGCCTTATTATGGCATGAGAGAACAATAAAGATTGTGGATATTGATGATTGATTCATTTATATGCAATAAAAACACTTTTT

Ace file of the UniGene sp_v3.0_unigene182969 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial inner membrane protease subunit, putative n=1 Tax=Ricinus communis RepID=B9SQ38_RICCO	-	-	3.0e-20	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%

Source	Gene names
Sma3	At3g08980; GSVIVT00021498001; LOC_Os03g05430; MZB10.1; OSJNBa0019G23.8; Os03g0147900; Os04g0165600; OsI_10025; OsI_14807; OsJ_13779; PHYPADRAFT_18944; POPTRDRAFT_1104271; RCOM_0644380; T16O11.6;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	serine-type peptidase activity	GO:0008236	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S26A, signal peptidase I	IPR000223	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3	Peptidase S26A, signal peptidase I, lysine active site	IPR019757	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G08980.1	Peptidase S24/S26A/S26B/S26C family protein chr3:2741279-2742375 FORWARD LENGTH=154	1.0e-22	78%
RefSeq	Arabidopsis thaliana	NP_187510.1	mitochondrial inner membrane protease subunit 2 [Arabidopsis thaliana]	2.0e-22	78%
RefSeq	Populus trichocarpa	XP_002323574.1	predicted protein [Populus trichocarpa]	1.0e-23	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2L1

Fln msg: your sequence is shorter than subject: 59 - 170

Fln protein: PEGHCWVEGDNAVSSLDSRSFGPVPLGLVQGRVTHVIWPPERVGAIEKRYPKERVSSY*

Protein Length: 60

Fln nts: TACCTGAAGGTCACTGCTGGGTTGAAGGAGACAATGCAGTTTCCAGCTTGGACTCCAGATCATTTGGGCCAGTTCCATTGGGTTTAGTGCAGGGCAGGGTTACTCATGTTATCTGGCCTCCTGAAAGAGTTGGTGCAATAGAGAAACGATATCCCAAGGAACGTGTCTCATCCTATTGA___CATAATGGCCTGGCAAGACCAAGATAATTTTCAGTTTTAATTTTCAACCCTTTATATAGTCATAAGCTTGACACAAATGCCTTATTATGGCATGAGAGAACAATAAAGATTGTGGATATTGATGATTGATTCATTTATATGCAATAAAAACACTTTTT

Fln Alignment:

AllPine_b_c2010___PEGHCWVEGDNAVSSLDSRSFGPVPLGLVQGRVTHVIWPPERVGAIEKRYPKERVSSY
A9P2L1________________PEGHCWVEGDNAVSSLDSRSFGPVPLGLVQGRVTHVIWPPERVGAIEKQYPKERVSSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain