SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene182900

Length: 1064 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene182900

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 1-gamma 3 n=4 Tax=Andropogoneae RepID=B6T7G7_MAIZE	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Elongation factor 1-gamma	-	-	2.541e-12	-

Source	Gene names
Sma3	AT1G09640; AT1G57720; At1g09640; At1g57720; B1131G07.12; GSVIVT00035293001; LOC_Os02g12800; LOC_Os06g37440; MtrDRAFT_AC140549g9v2; OSJNBa0006A22.2; Os02g0220500; Os02g0220600; Os06g0571400; OsI_06401; OsI_06402; OsI_23436; OsJ_05923; OsJ_21756; P0610D01.1

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	eukaryotic translation elongation factor 1 complex	GO:0005853	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EF1B, gamma chain, conserved	IPR001662	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G09640.1	Translation elongation factor EF1B, gamma chain chr1:3120162-3122152 FORWARD LENGTH=414	75%
RefSeq	Arabidopsis thaliana	NP_563848.1	elongation factor EF-1 gamma subunit [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002331090.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWP6

Fln msg: your sequence is shorter than subject: 248 - 424

Fln protein: MTKDFTKEFPHVERYFWTMVNQPKFKKIMGEVKQTDAVPPVVQTRKAAATKEQKQKPKQEAPKKEPANPKVEDTPAYDEEEAPKPKPKNSLDLLPPSKMILDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSYVTLNKVTGFLQRMDLARKYAFGKMLIIGEKGPFKVKGLWLFRGPEIPKFVMDECYDMELYEWTKVDINDEAQKERVNAMIEDQEPFEGEPLLDSKCFK*

Protein Length: 249

Fln nts: GCATGACAAAAGACTTCACTAAAGAGTTTCCTCATGTTGAGCGGTACTTTTGGACTATGGTTAATCAACCTAAATTCAAGAAGATTATGGGTGAAGTTAAACAAACAGATGCTGTTCCTCCAGTTGTGCAGACTAGGAAGGCTGCTGCAACCAAGGAACAAAAGCAAAAGCCTAAACAGGAGGCCCCAAAAAAAGAACCCGCAAACCCCAAGGTTGAAGATACTCCAGCATACGATGAGGAAGAGGCCCCCAAGCCAAAGCCAAAAAATTCTCTTGATCTCCTACCACCAAGTAAAATGATTCTTGATGACTGGAAGAGGCTTTATTCGAACACGAAGACTAATTTTCGAGAGGTTGCTATTAAAGGGTTCTGGGATATGTATGATCCAGAGGGTTATTCCTTGTGGTTCTGTGAGTACAAATACAATGATGAGAACACAGTTTCATATGTCACATTGAACAAAGTCACGGGATTCTTGCAGCGCATGGATCTTGCACGCAAGTATGCTTTTGGAAAGATGCTTATCATTGGAGAAAAGGGTCCTTTTAAAGTCAAGGGATTATGGCTCTTCCGTGGCCCAGAAATTCCGAAGTTCGTTATGGATGAATGCTACGATATGGAGTTGTATGAATGGACTAAGGTGGACATCAATGATGAGGCTCAGAAAGAGCGTGTGAATGCCATGATTGAAGATCAAGAGCCCTTTGAGGGTGAGCCTTTGTTGGATTCCAAATGTTTCAAGTGA___TTCTGAATCGCAGTTTTGAAGATTTGGTTGTGTTTAGAAATATCTTGTTTTTGTTTAGTGTTTTGTCTACAATTTATGCAGAGAAGCCTTTTATGCAACTGGTTAAGGTCAAGTTGCCTTTCCGAGATTTGGGGTATAGTTCTTTCTAGCATGGAACACTGTATCTTACTTCCTTTGCTGTAACTTGAGAACAATTATTTCTACATTTCAAGTCTTTCGCAATGGGGGTTTGATGTTAGTGCTAATGTAACGTTTTCAAGCTAGCATAGCGAGTTGACTATTGCAGATTTCAATACTGTTCTGAGAACATATTTTGAA

Fln Alignment:

AllPine_b_c969___MTKDFTKEFPHVERYFWTMVNQPKFKKIMGEVKQTDAVPPVVQT--RXXXXXXXXXXXXXXXXXXXXXXNPKVEDTPAYDEEE-APKPKPKNSLDLLPPSKMILDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSYVTLNKVTGFLQRMDLARKYAFGKMLIIGEKGPFKVKGLWLFRGPEIPKFVMDECYDMELYEWTKVDINDEAQKERVNAMIEDQEPFEGEPLLDSKCFK
A9NWP6________________MTKDFTKEFPHVERYFWTMVNQPKVKKILGEVKQADAVPAVVHPNKKAAAPAKEQKQKPKQEVKIKEAAKPKVEDPPAADEEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVTGFLQRMDLARKYAFGKMLIIGKEGPFKVKGLWLFRGPEIPKFFVDECYDMELYEWTKVDLNDEAQKELVNAMIEDQEPFEGEPLLDAKCFK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
330		75		25	0.996481
475	16		83		0.994523
616		33		66	1.0
661		50		50	1.0
753	50			50	1.0
761		50	50		1.0
874		75	25		0.99649
1022		80		20	0.995493
1042	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain