SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene182860

Length: 1250 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene182860

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase-like protein n=3 Tax=Andropogoneae RepID=B6SJE4_MAIZE	-	-	0.0	57%
FL-Next	sp=Probable carbohydrate esterase At4g34215; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Sma3	Receptor protein kinase-like protein	-	-	2.493e-09	-

Source	Gene names
Sma3	At3g53010; At4g34215; F10M10.12; F28A23_20; F8J2_180; GSVIVT00014885001; GSVIVT00014886001; GSVIVT00036650001; H0117D06-OSIGBa0088B06.7; H0201G08.9; LOC_Os03g64030; LOC_Os03g64050; MtrDRAFT_AC150207g1v2; MtrDRAFT_AC158501g26v2; OSJNBa0009K15.9; OSJNBa0027

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF303, acetylesterase putative	IPR005181	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34215.1	Domain of unknown function (DUF303) chr4:16380203-16381192 REVERSE LENGTH=260	58%
RefSeq	Arabidopsis thaliana	NP_567960.1	uncharacterized protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002300236.1	predicted protein, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q8L9J9

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 243 - 260

Fln protein: MDIFVLSGQSNMAGRGGVYNSHWDHFLTDECQPDPSIFRLNSHLQWEQAREPLHADIDERKVCGTGPGMIFANIILKHSKDPEKTRIGLVPCAIGGTAIKEWEKGSSLYENMITRTKAALNHGGILRAILWYQGESDAGSDQDANSYKQNLERLIDDIRSDLQHPDLLFIQVAITVGDPPYNELVQKVREAQLGVNIPNVYCVDAKGLPLKEDKLHLTTEAQVQLGKMLADVYESHGISNKS*

Protein Length: 244

Fln nts: CAACAGCATAAAACAAATTCGGCAGATATGAAAAACATTCTGAGAACCGCCGTTTAAGGGGGATAAAGCACCTCTGCAGACACATTCGGTCTAATAATTAACGCGGGCATAATTAACGGCTAAATCTGTTAAAGCAGAGA_-_ATGGATATCTTCGTCCTCTCAGGGCAGAGCAACATGGCGGGCAGGGGAGGAGTCTATAATTCTCATTGGGACCATTTCCTTACTGATGAATGCCAACCAGACCCTTCAATTTTTAGGCTCAATTCACATCTTCAGTGGGAGCAAGCCCGTGAACCTCTACATGCGGATATAGATGAACGAAAAGTGTGCGGCACAGGCCCCGGAATGATTTTTGCAAACATTATATTGAAGCACAGTAAAGATCCCGAAAAGACCCGTATTGGTTTGGTTCCTTGTGCCATTGGAGGTACTGCGATCAAAGAATGGGAAAAGGGCAGCTCACTCTATGAGAACATGATAACTAGAACTAAGGCAGCTCTCAATCACGGAGGCATTTTGAGAGCAATTCTGTGGTATCAAGGCGAAAGTGATGCAGGATCTGATCAGGATGCTAATAGTTATAAACAGAACCTCGAGAGACTTATCGACGATATCCGCTCGGATCTGCAACATCCTGATCTCCTTTTCATCCAGGTTGCTATAACTGTGGGGGATCCTCCCTACAATGAACTCGTGCAGAAGGTGAGGGAAGCACAGTTGGGTGTTAACATTCCAAATGTTTACTGTGTTGATGCCAAAGGACTTCCCCTCAAGGAGGACAAACTTCACTTGACAACAGAGGCACAGGTGCAGCTGGGCAAAATGCTGGCAGATGTCTATGAAAGCCATGGGATTTCCAACAAAAGTTAGCTGGTGGCAGTTCATACTGTTTGGGATGAAAAAGAGAAGTCTGTTTTTGCTCAGGATGGCCCTATTGATTGTACTGAATGTTCTTGAGGTTTAGAGATTTCTGCTGAATATGAATTAAAGCATAAGAGTTTCTGCCACTGCTGTGATCTGAATAGAATTCCTGTTTTGATCATTATTTAATGTTAGGGCCACTTCCTACTATGAGGAATATAAAAAATTGTTCAATGATTTGTTGTACATACTACATATTAATTCGATTAAAACTTCATCTAATACTTTTGTGTTCTTTGTTATCTATGTTTGAAGAAGCTTGTGAAGCAACCTGAGACACTTAAAGCAGCTTGGCATCGACTAATATAATGGAGTGAACTTTGTTAAGAC

Fln Alignment:

AllPine_b_c120___IFVLSGQSNMAGRGGVYNSH------WDHFLTDECQPDPSIFRLNSHLQWEQAREPLHADIDERKVCGTGPGMIFANIILKHSKDPEKTRIGLVPCAIGGTAIKEWEKGSSLYENMITRTKAALNHGGILRAILWYQGESDAGSDQDANSYKQNLERLIDDIRSDLQHPDLLFIQVAITVGDPPYNELVQKVREAQLGVNIPNVYCVDAKGLPLKEDKLHLTTEAQVQLGKMLADVYESH
Q8L9J9________________IFILSGQSNMAGRGGVFKDHHNNRWVWDKILPPECAPNSSILRLSADLRWEEAHEPLHVDIDTGKVCGVGPGMAFANAV-KNRLETDSAVIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRKCGGEIKAVLWYQGESDVLDIHDAESYGNNMDRLIKNLRHDLNLPSLPIIQVAIASG----GGYIDKVREAQLGLKLSNVVCVDAKGLPLKSDNLHLTTEAQVQLGLSLAQAYLSN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
342	40	60			1.0
823	16	83			0.994512
933	25		75		1.0
1041			53	46	1.0
1063		66		33	1.0
1132		25		75	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain