SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene182859

Length: 1248 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene182859

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative cinnamyl alcohol dehydrogenase 1 [Arabidopsis thaliana] sp\|Q9CAI3.1\|CADH1_ARATH RecName: Full=Probable cinnamyl alcohol dehydrogenase 1; Short=AtCAD1 gb\|AAG51850.1\|AC010926_13 putative cinnamyl-alcohol dehydrogenase; 49641-51171 [Arabidopsis thal	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Cinnamyl alcohol dehydrogenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cinnamyl-alcohol dehydrogenase.	EC:1.1.1.195	-	0.0	-

Source	KEGGs	Term	Type	Identity
Sma3	Phenylpropanoid biosynthesis	00940		%
Sma3	Biosynthesis of phenylpropanoids	01061		%
Sma3	Metabolic pathways	01100		%
Sma3	Biosynthesis of secondary metabolites	01110		%
Sma3	Mannitol dehydrogenase.	EC:1.1.1.255	-	-

Source	Gene names
Sma3	AT2G21730; AT2G21890; AT4G37970; AT4G37980; AT4G39330; AT4g37970; At1g72680; At2g21730; At2g21890; At3g19450; At4g37970; At4g37980; At4g37990; At4g39330; AtCAD1; BM1; CAD; CAD1; CAD14; CAD19; CAD2; CAD3; CAD4; CAD6; CAD7; CAD8; CADL1; CADL10; CADL11; CADL

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	acyl carrier activity	GO:0000036	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	-
Sma3	mannitol dehydrogenase activity	GO:0046029	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	Phosphopantetheine-binding	IPR006163	-	-
Sma3	Acyl carrier protein-like	IPR009081	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G72680.1	ATCAD1, CAD1 cinnamyl-alcohol dehydrogenase chr1:27359346-27360876 REVERSE LENGTH=355	69%
RefSeq	Arabidopsis thaliana	NP_177412.1	putative cinnamyl alcohol dehydrogenase 1 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002307925.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK95

Fln msg: your sequence is shorter than subject: 244 - 356. Was predicted as Complete, but is very much shorter than de subject

Fln protein: MNTKEDSKENCSGWAARDPSGVLSPYQFNRRYCFKIPDNLPLASAAPLLCAGITVYSPMIRHHMNHAGKSLGVIGLGGLGHMAVKFGKAFGLNVTILSTSASKKDEALSILGADKFLLSSDKQHIEASSKTLDFIIDTASGDHPIDLYMPLLKTSGVFVIVGSPSEIKIHPANLIMGMKSIAGSLTGGTKDTQEMLDFCAKERVYPNIEVIPIQYINEALERIINKDVKYRFVIDIENSLVSN*

Protein Length: 245

Fln nts: TCCGTCCAAGTCTGGTGGACGTTAAAATTTAATTTAATGTTATTTATTTAATTTATAGCTTTAACAGGGTATTGGATCGACCTATCAGATCTGCAAGCATCGAGCTGAGAGGAGCTTTTCGGATAGTCCATAAAGTGAAAGGTGCAACAGGGATCTGCAAACTCCGAGAGTAGGTACACC_-_ATGAATACTAAGGAAGACAGCAAGGAGAACTGTTCAGGATGGGCAGCTCGAGATCCATCAGGTGTTTTGTCACCTTACCAATTTAACCGAAGGTACTGCTTTAAGATACCAGACAATCTACCACTGGCTTCAGCTGCACCTTTGCTCTGTGCAGGAATTACTGTTTACAGCCCTATGATTCGTCATCACATGAATCATGCAGGCAAGTCTCTTGGAGTAATTGGGCTAGGAGGTCTTGGTCATATGGCAGTAAAATTTGGAAAGGCTTTTGGACTGAACGTAACAATTTTGAGCACATCTGCATCAAAGAAGGATGAAGCATTGAGCATTCTTGGAGCAGATAAATTTTTATTGTCATCTGATAAACAGCATATAGAGGCTTCTTCAAAGACCCTTGATTTCATCATTGACACTGCTTCAGGGGACCACCCAATTGATCTTTATATGCCACTTTTGAAGACTTCAGGAGTGTTTGTAATTGTAGGTTCCCCTAGTGAAATCAAGATCCATCCTGCCAATCTTATTATGGGCATGAAATCGATTGCAGGGAGTTTAACAGGTGGCACCAAAGACACTCAAGAAATGCTTGATTTTTGTGCAAAGGAAAGAGTATATCCAAACATTGAAGTCATTCCAATCCAGTATATTAATGAGGCCTTAGAACGAATAATTAACAAAGATGTGAAATATCGCTTTGTAATTGACATTGAGAATTCTCTAGTCTCAAATTGA___GCTCCCAGAACCAATGTGCAGGATGTGACACTGCTGATTGAAAATCTCAATGGGTTTTTGGCATTATGTTATATGGTTTGTTATATCATAATGGACGTATGATATGGTCATTATTTATGATTAGCCATAATTATATAGACGACTGAGGCATCTGTACTATATAGATAGCCTCTCATTGTGTATATTGTATCATCATACTTATTGAATACATTTATGGTTTCCTGCCTTAACTTCTTCATGGATTTATGTTACTGCCCTTGGGCATTCTATTCTCGTGAACACAGAGATAAGTCTCGTGAATAGGCAATCGATACAATCTTTACTATACCAAAAAAA

Fln Alignment:

AllPine_b_c34___MNTKEDSKENCSGWAARDPSGVLSPYQFNRR
A9NK95________________MNTKEDCKENCKGWAARDPSGVLSPYQFNRR

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
362		25		75	0.99649
514		66	33		0.997452
671		66		33	0.997458
712			66	33	0.997452
798	75		25		0.996473
843	25	75			0.996476
855	50		25		0.995533
856	25		25		0.995533
868		40		60	1.0
911		20		80	0.995494
940	80			20	0.995493
958		40		60	1.0
965		33		66	0.997452
1040	57		42		1.0
1078		12		87	0.992554
1098	50		50		1.0
1102	75		25		1.0
1117	87		12		0.992554
1142	16	83			0.994513
1159	80	20			0.995493
1234	66		33		0.997467
1248	66			33	0.997476
1250		66	33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain