SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168340

Length: 123 nt

UniGene Fasta

>sp_v3.0_unigene168340
CTATCATAGATCGTGATTAATTTATGCTTCCATGGGCTACTCTAGGGCATGTTGATACTGCAGTTTATGGTGTGCCAAGCCCAGAAATCTCTCGCAGACAAATTTTGCAGCAATATCAGAAAT

Ace file of the UniGene sp_v3.0_unigene168340

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	FMN-linked oxidoreductase-like protein protein n=5 Tax=Arabidopsis RepID=Q8H128_ARATH	-	-	1.0e-05	73%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%

Source	GOs	Term	Type	Identity
Sma3	tRNA dihydrouridine synthase activity	GO:0017150	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	tRNA processing	GO:0008033	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	tRNA-dihydrouridine synthase	IPR001269	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q8LFT6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 103 aas, your sequence is shorter than subject: 40 - 404

Fln protein: IIDRD*FMLPWATLGHVDTAVYGVPSPEISRRQILQQYQK

Protein Length: 41

Fln nts: CTATCATAGATCGTGATTAATTTATGCTTCCATGGGCTACTCTAGGGCATGTTGATACTGCAGTTTATGGTGTGCCAAGCCCAGAAATCTCTCGCAGACAAATTTTGCAGCAATATCAGAAAT

Fln Alignment:

HIF1XHV03GCJ4X___PWATLGHVDTAVYGVPSPEISRRQILQQYQ
Q8LFT6________________PWQTLGHVDTAVYGVPSSGLTRRQVLEQYQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain