SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168338

Length: 236 nt

UniGene Fasta

>sp_v3.0_unigene168338
ACTAAGACATTATTTGTGATAAACTTTGATCCTACTACTAACTACCAGAATCAGGGACCTTGAAAATCATTTTCAGCCCTATGGCAAAGTGGTGAATGTAAGGATTAGAAGGAATTTTGCATTTGTTCATTTTGAATCACAAGAAGAGGCGACTAAAGCTTTCGACTCCACCCATATGAGCAAATTATTAGATAGGGTGATCACAGTGGAATATGCCCAACGTGAGGATGGTAATA

Ace file of the UniGene sp_v3.0_unigene168338

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4IJ76_ARATH	-	-	4.0e-20	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Arginine/serine-rich splicing factor RSP41	-	-	1.648e-16	-

Source	Gene names
Sma3	AT2G46610; AT4G25500; AT4g25500; AT5G52040; At2g46610; At3g61860; At4g25500; At5g52040; F21F14.30; GSVIVT00008658001; GSVIVT00026247001; H0716A07.4; M7J2.130; OSJNBa0020P07.8; Os02g0122800; Os04g0118900; OsI_05650; OsI_14641; OsJ_05182; OsJ_13581; P0575F1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	spliceosomal complex	GO:0005681	Cellular Component	-
Sma3	nuclear speck	GO:0016607	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46610.1	RS31a, At-RS31a RNA-binding (RRM/RBD/RNP motifs) family protein chr2:19136769-19138492 REVERSE LENGTH=250	9.0e-25	72%
RefSeq	Arabidopsis thaliana	NP_973702.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	9.0e-25	72%
RefSeq	Populus trichocarpa	XP_002318257.1	predicted protein, partial [Populus trichocarpa]	2.0e-24	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTP2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 118 aas, your sequence is shorter than subject: 78 - 289

Fln protein: LRHYL**TLILLLTTRIRDLENHFQPYGKVVNVRIRRNFAFVHFESQEEATKAFDSTHMSKLLDRVITVEYAQREDGN

Protein Length: 79

Fln nts: ACTAAGACATTATTTGTGATAAACTTTGATCCTACTACTAACTACCAGAATCAGGGACCTTGAAAATCATTTTCAGCCCTATGGCAAAGTGGTGAATGTAAGGATTAGAAGGAATTTTGCATTTGTTCATTTTGAATCACAAGAAGAGGCGACTAAAGCTTTCGACTCCACCCATATGAGCAAATTATTAGATAGGGTGATCACAGTGGAATATGCCCAACGTGAGGATGGTAATA

Fln Alignment:

HIF1XHV03GSCD5___DLENHFQPYGKVVNVRIRRNFAFVHFESQEEATKAFDSTHMSKLLDRVITVEYAQREDGN
A9NTP2________________DLERHFEPYGKVLNVRIRRNFAFIHYGTQEEATKAFDATHMSTLLDRVITVEYAQREDGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain