SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168328

Length: 145 nt

UniGene Fasta

>sp_v3.0_unigene168328
AGCACATACATTCCACAAGCACCATCTGATGGACCTCCGGTTCATACCTCAAAGAGGGCATGTGCGAGTACCTATCCCAGTTTACAACAGCAAGGCATCATATGGTTTTGGCCAAACAACGATCCCCAGTTCAAAGATATTGCCC

Ace file of the UniGene sp_v3.0_unigene168328

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	Pheophorbide A oxygenase, putative	-	-	2.665e-08	-

Source	Gene names
Sma3	At4g25650; GSVIVT00024790001; GSVIVT00024792001; POPTRDRAFT_555212; POPTRDRAFT_639645; POPTRDRAFT_847566; RCOM_0445950; RCOM_0445980;

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR005806	-	-
Sma3	Pheophorbide a oxygenase	IPR013626	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G25650.2	ACD1-LIKE, PTC52, TIC55-IV ACD1-like chr4:13081021-13083153 REVERSE LENGTH=559	3.0e-17	68%
RefSeq	Arabidopsis thaliana	NP_567725.1	ACD1-like protein [Arabidopsis thaliana]	3.0e-17	68%
RefSeq	Populus trichocarpa	XP_002304860.1	predicted protein [Populus trichocarpa]	4.0e-18	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEJ2

Fln msg: Distance to subject end: 263 aas, your sequence is shorter than subject: 48 - 480

Fln protein: STYIPQAPSDGPPVHTSKRACASTYPSLQQQGIIWFWPNNDPQFKDIA

Protein Length: 49

Fln nts: AGCACATACATTCCACAAGCACCATCTGATGGACCTCCGGTTCATACCTCAAAGAGGGCATGTGCGAGTACCTATCCCAGTTTACAACAGCAAGGCATCATATGGTTTTGGCCAAACAACGATCCCCAGTTCAAAGATATTGCCC

Fln Alignment:

HIF1XHV03FOMOK___YIPQAPSDGPPVHTSKRACASTYPSLQQQGIIWFWPNNDPQFKDIA
D5AEJ2________________YIPQEPSDGPRVHTSKRACASTYPSLQQQGIIWFWPNTDPQFKDTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain