SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168320

Length: 126 nt

UniGene Fasta

>sp_v3.0_unigene168320
TGGCCAGATTAAACCTGGACTGGAACTTCGCAACCCTCCTACCATTTGGACAAGGGAGTTCAAGTTTCCACATGCGGTTTGGGCTGCTGGTCGAGGTTTAGTGGCTCTTCTTCTTCCTAAATTTGA

Ace file of the UniGene sp_v3.0_unigene168320

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	72%

Source	Gene names
Sma3	GSVIVT00031184001; PHYPADRAFT_191392; PHYPADRAFT_194769; POPTRDRAFT_662999; RCOM_0610060; T6K12.4;

Source	GOs	Term	Type	Identity
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	metalloendopeptidase activity	GO:0004222	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Peptidase M41	IPR000642	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04340.1	emb2458 FtsH extracellular protease family chr3:1146943-1153341 REVERSE LENGTH=1320	1.0e-13	68%
RefSeq	Arabidopsis thaliana	NP_187084.6	FtsH extracellular protease family [Arabidopsis thaliana]	2.0e-13	68%
RefSeq	Populus trichocarpa	XP_002319118.1	predicted protein, partial [Populus trichocarpa]	6.0e-18	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TG62

Fln msg: Distance to subject end: 206 aas, your sequence is shorter than subject: 41 - 863

Fln protein: GQIKPGLELRNPPTIWTREFKFPHAVWAAGRGLVALLLPKF

Protein Length: 42

Fln nts: TGGCCAGATTAAACCTGGACTGGAACTTCGCAACCCTCCTACCATTTGGACAAGGGAGTTCAAGTTTCCACATGCGGTTTGGGCTGCTGGTCGAGGTTTAGTGGCTCTTCTTCTTCCTAAATTTGA

Fln Alignment:

HIF1XHV03F1YJB___QIKPGLELRNPPTIWTREFKFPHAVWAAGRGLVALLLPKF
A9TG62________________ETRPGIELENPPVIWTREYKFPHAVWAAGRALTAFLLPSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain