SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168256

Length: 168 nt

UniGene Fasta

>sp_v3.0_unigene168256
CAGGCAGGTAAAATGGATGCGCATAATGGAGACCAGAAAGTGGTGTTAGAGGAAGAACAGTCGCTGATTGAAGAGGTGGCATTGGTGGTGCCGGTGACAGATGATCCATCTCTCCCCGTCTTTACATTTCGTGTGTGGGTTCTGGGATGCGTGTCATGTGTTCTGCTC

Ace file of the UniGene sp_v3.0_unigene168256

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oligopeptide transporter 1 n=3 Tax=Arabidopsis RepID=OPT1_ARATH	-	-	7.0e-10	60%
FL-Next	sp=Oligopeptide transporter 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Sma3	Oligopeptide transporter OPT family	-	-	1.605e-07	-

Source	Gene names
Sma3	At4g10770; GSVIVT00015061001; GSVIVT00015062001; GT1; OPT7; OsI_02950; POPTRDRAFT_760608; POPTRDRAFT_817437; RCOM_0861300; T12H20.7;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oligopeptide transporter activity	GO:0015198	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	0.0	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55930.1	ATOPT1, OPT1 oligopeptide transporter 1 chr5:22652988-22655827 FORWARD LENGTH=755	3.0e-14	60%
RefSeq	Arabidopsis thaliana	NP_200404.1	oligopeptide transporter 1 [Arabidopsis thaliana]	4.0e-14	60%
RefSeq	Populus trichocarpa	XP_002303684.1	oligopeptide transporter OPT family [Populus trichocarpa]	6.0e-13	70%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FG72

Fln msg: Distance to subject end: 686 aas, atg_distance in limit (1-15): atg_distance = 14, your sequence is shorter than subject: 52 - 755

Fln protein: MDAHNGDQKVVLEEEQSLIEEVALVVPVTDDPSLPVFTFRVWVLGCVSCVLL

Protein Length: 53

Fln nts: CAGGCAGGTAAA_-_ATGGATGCGCATAATGGAGACCAGAAAGTGGTGTTAGAGGAAGAACAGTCGCTGATTGAAGAGGTGGCATTGGTGGTGCCGGTGACAGATGATCCATCTCTCCCCGTCTTTACATTTCGTGTGTGGGTTCTGGGATGCGTGTCATGTGTTCTGCTC

Fln Alignment:

HIF1XHV03FSW0N___NGDQKVVLEEEQSLIEEVALVVPVTDDPSLPVFTFRVWVLGCVSCVLL
Q9FG72________________NGEEEVLEEENDNPIEEVRLTVPITDDPTLPVLTFRTWTLGLFSCILL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain