SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168159

Length: 144 nt

UniGene Fasta

>sp_v3.0_unigene168159
ATGTGACTTGCAGAGTGAGCATGAGCGTTATATAACAGAGGAAGCCTTTTCTGGTTCACCTGTTATTATAAGAGATTATCCCAAAGATATAAAAGCTTTCTATATGCGAGAAAATGCAGATGGGAAGACTGTAGCAGCTATGGA

Ace file of the UniGene sp_v3.0_unigene168159

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	asparaginyl-tRNA synthetase, putative [Brassica oleracea]	-	-	1.0e-16	91%
FL-Next	sp=Asparagine--tRNA ligase, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	91%
Sma3	Asparaginyl-tRNA synthetase, cytoplasmic 3	-	-	1.82e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Asparagine--tRNA ligase.	EC:6.1.1.22	-	2.556e-13	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		2.556e-13	%

Source	Gene names
Sma3	31.t00024; At1g70980; At4g17300; At5g56680; B1039D07.28; B1045D11.6; CHLREDRAFT_117306; EMB2755; F15H11.17; GSVIVT00008056001; GSVIVT00016614001; MICPUCDRAFT_51256; MICPUCDRAFT_63451; MICPUN_59321; MICPUN_63150; MIK19.13; NS1; OJ1753_E03.117; OSTLU_19266;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	GO:0004365	Molecular Function	-
Sma3	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	-
Sma3	aspartate-tRNA ligase activity	GO:0004815	Molecular Function	-
Sma3	asparagine-tRNA ligase activity	GO:0004816	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	glucose metabolic process	GO:0006006	Biological Process	-
Sma3	tRNA aminoacylation for protein translation	GO:0006418	Biological Process	-
Sma3	asparaginyl-tRNA aminoacylation	GO:0006421	Biological Process	-
Sma3	aspartyl-tRNA aminoacylation	GO:0006422	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	WHEP-TRS	IPR000738	-	-
Sma3	Aspartyl/Asparaginyl-tRNA synthetase, class IIb	IPR002312	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)	IPR004364	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	Asparaginyl-tRNA synthetase, class IIb	IPR004522	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	IPR018150	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G17300.1	NS1, OVA8, ATNS1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein chr4:9681558-9684833 FORWARD LENGTH=567	3.0e-22	91%
RefSeq	Arabidopsis thaliana	NP_193462.1	asparaginyl-tRNA synthetase [Arabidopsis thaliana]	4.0e-22	91%
RefSeq	Populus trichocarpa	XP_002309798.1	predicted protein [Populus trichocarpa]	2.0e-23	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O48593

Fln msg: Distance to subject end: 85 aas, your sequence is shorter than subject: 47 - 567

Fln protein: CDLQSEHERYITEEAFSGSPVIIRDYPKDIKAFYMRENADGKTVAAM

Protein Length: 48

Fln nts: ATGTGACTTGCAGAGTGAGCATGAGCGTTATATAACAGAGGAAGCCTTTTCTGGTTCACCTGTTATTATAAGAGATTATCCCAAAGATATAAAAGCTTTCTATATGCGAGAAAATGCAGATGGGAAGACTGTAGCAGCTATGGA

Fln Alignment:

HIF1XHV03GH6QU___DLQSEHERYITEEAFSGSPVIIRDYPKDIKAFYMRENADGKTVAAM
O48593________________DLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain