SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168137

Length: 93 nt

UniGene Fasta

>sp_v3.0_unigene168137
CATCATCCCATCTATATTCGAGCCATGTGGATTGACCCAGATGATAGCCATGAGATATGGCTCCATACCTGTAGCACGGAGAACAGGAGGCTT

Ace file of the UniGene sp_v3.0_unigene168137

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Starch synthase-like protein n=2 Tax=Arabidopsis thaliana RepID=O49727_ARATH	-	-	8.0e-09	93%
FL-Next	tr=Starch synthase VI; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	66%
Sma3	Starch synthase IV	-	-	2.188e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Starch synthase.	EC:2.4.1.21	-	1.981e-21	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.981e-21	%
Sma3	Metabolic pathways	01100		1.981e-21	%

Source	Gene names
Sma3	AT4g18240; At1g11720; At4g18240; CHLREDRAFT_205618; GSVIVT00003411001; GSVIVT00010759001; MA4_106O17.2; MICPUCDRAFT_51899; MICPUN_83891; OSJNBa0053E05.15; OSJNBa0056O06.4-1; OSTLU_41260; Os01g0720600; Os05g0533600; OsI_03547; OsI_20755; OsI_28103; OsJ_032

Source	GOs	Term	Type	Identity
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	glycogen (starch) synthase activity	GO:0004373	Molecular Function	-
Sma3	starch synthase activity	GO:0009011	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-
Sma3	glucan biosynthetic process	GO:0009250	Biological Process	-
Sma3	starch biosynthetic process	GO:0019252	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	IPR006137	-	-
Sma3	NADH-ubiquinone oxidoreductase, 20 Kd subunit	IPR006138	-	-
Sma3		IPR009756	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G18240.1	ATSS4, SSIV, SS4 starch synthase 4 chr4:10082221-10087044 FORWARD LENGTH=1040	2.0e-13	93%
RefSeq	Arabidopsis thaliana	NP_193558.3	starch synthase 4 [Arabidopsis thaliana]	3.0e-13	93%
RefSeq	Populus trichocarpa	XP_002298514.1	predicted protein, partial [Populus trichocarpa]	8.0e-13	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8YDY5

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 30 - 655

Fln protein: IIPSIFEPCGLTQMIAMRYGSIPVARRTGG

Protein Length: 31

Fln nts: CATCATCCCATCTATATTCGAGCCATGTGGATTGACCCAGATGATAGCCATGAGATATGGCTCCATACCTGTAGCACGGAGAACAGGAGGCTT

Fln Alignment:

HIF1XHV03G9VM9___IIPSIFEPCGLTQMIAMRYGSIPVARRTGG
B8YDY5________________LVPSMYEPCGLAQMIGMRYGAVPIVRRTGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain