SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168134

Length: 165 nt

UniGene Fasta

>sp_v3.0_unigene168134
GAGCCAGGACATAGTTGGATTGAGATCAAGAACAAAGTGCATTTGTTTGTTGCTGGTGACAGATCTCACCTGCAGGCTATGCAAATTGATGCCAAGTTGGAGAAAATGACTGTACAGATGAAGGAAAGAGGATATGTGCCTGCTGAAAAGTCTGAGCTATATAGT

Ace file of the UniGene sp_v3.0_unigene168134

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Gene names
Sma3	POPTRDRAFT_642949; PPR;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27610.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr2:11783927-11786533 REVERSE LENGTH=868	2.0e-11	55%
RefSeq	Arabidopsis thaliana	NP_180329.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-11	55%
RefSeq	Populus trichocarpa	XP_002301973.1	predicted protein [Populus trichocarpa]	1.0e-14	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 55 - 370

Fln protein: EPGHSWIEIKNKVHLFVAGDRSHLQAMQIDAKLEKMTVQMKERGYVPAEKSELYS

Protein Length: 56

Fln nts: GAGCCAGGACATAGTTGGATTGAGATCAAGAACAAAGTGCATTTGTTTGTTGCTGGTGACAGATCTCACCTGCAGGCTATGCAAATTGATGCCAAGTTGGAGAAAATGACTGTACAGATGAAGGAAAGAGGATATGTGCCTGCTGAAAAGTCTGAGCTATATAGT

Fln Alignment:

HIF1XHV03GJKDO___EPGHSWIEIKNKVHLFVAGDRSHLQAMQIDAKLEKMTVQMKERGYVP
A9P0W0________________EPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain