SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168064

Length: 139 nt

UniGene Fasta

>sp_v3.0_unigene168064
GAGACAGGAAAAACGGTTGAAGTGTCTCAGATCAGACAATGGAGGTGAATATTGTAGCAAAGAGTTTGATAGGCACTGTTTAGAGAATGGAATTCGTAGAGAGAAGACAGTTCTAGGAACACCACAAGAGAATGGTGTG

Ace file of the UniGene sp_v3.0_unigene168064

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Nicotiana tabacum RepID=POLX_TOBAC	-	-	2.0e-09	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 170 aas, your sequence is shorter than subject: 46 - 407

Fln protein: RQEKRLKCLRSDNGGEYCSKEFDRHCLENGIRREKTVLGTPQENGV

Protein Length: 47

Fln nts: GAGACAGGAAAAACGGTTGAAGTGTCTCAGATCAGACAATGGAGGTGAATATTGTAGCAAAGAGTTTGATAGGCACTGTTTAGAGAATGGAATTCGTAGAGAGAAGACAGTTCTAGGAACACCACAAGAGAATGGTGTG

Fln Alignment:

HIF1XHV03G9RQA___KRLKCLRSDNGGEYCSKEFDRHCLENGIRREKTVLGTPQENGV
B8LKX7________________KSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain