SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168037

Length: 186 nt

UniGene Fasta

>sp_v3.0_unigene168037
CTAGTTCAAATTCTCGTCATCCAACACTGCAACTTGTTTGGGGAAGTACAATGTATCACTTGCTGGATTTGCCATTCAAGCCAGAATACATTCCTGATGTGTATACTGAATTCCGAAAGGCAGTGGAGTCAAAGTGCAAAGTCCGACCTTGCTATAAGCTGCCCACCTCACTTGGACCTTTTCCAA

Ace file of the UniGene sp_v3.0_unigene168037

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[L] COG0415 Deoxyribodipyrimidine photolyase	-	-	7.0e-08	48%
FL-Next	sp=Cryptochrome DASH, chloroplastic/mitochondrial; Oryza sativa subsp. japonica (Rice).	-	-	0.0	66%
Sma3	Cryptochrome DASH, chloroplastic/mitochondrial	-	-	1.439e-08	-

Source	Gene names
Sma3	CRY3; CRYD; Cry3; GSVIVT00032351001; LOC_Os06g45100; OSJNBa0051O02.40; OSJNBb0065C04.7; Os06g0661800; OsI_24002; OsJ_22248; PHYPADRAFT_200971; POPTRDRAFT_785478; VITISV_014519;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA photolyase activity	GO:0003913	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	protein-chromophore linkage	GO:0018298	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cryptochrome/DNA photolyase, class 1	IPR002081	-	-
Sma3	DNA photolyase, FAD-binding/Cryptochrome, C-terminal	IPR005101	-	-
Sma3	DNA photolyase, N-terminal	IPR006050	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Cryptochrome, DASH	IPR014133	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal	IPR018394	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G24850.1	CRY3 cryptochrome 3 chr5:8535399-8538016 REVERSE LENGTH=526	5.0e-17	60%
RefSeq	Arabidopsis thaliana	NP_568461.2	cryptochrome DASH [Arabidopsis thaliana]	7.0e-17	60%
RefSeq	Populus trichocarpa	XP_002330820.1	predicted protein [Populus trichocarpa]	6.0e-21	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q651U1

Fln msg: Distance to subject end: 304 aas, your sequence is shorter than subject: 61 - 582

Fln protein: SSNSRHPTLQLVWGSTMYHLLDLPFKPEYIPDVYTEFRKAVESKCKVRPCYKLPTSLGPFP

Protein Length: 62

Fln nts: CTAGTTCAAATTCTCGTCATCCAACACTGCAACTTGTTTGGGGAAGTACAATGTATCACTTGCTGGATTTGCCATTCAAGCCAGAATACATTCCTGATGTGTATACTGAATTCCGAAAGGCAGTGGAGTCAAAGTGCAAAGTCCGACCTTGCTATAAGCTGCCCACCTCACTTGGACCTTTTCCAA

Fln Alignment:

HIF1XHV03HCP3L___RHPTLQLVWGSTMYHLLDLPFKPEYIPDVYTEFRKAVESKCKVRPCYKLPTSLGPFP
Q651U1________________RNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRKAVESKSSVRNCSKLPPSLGPPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain