SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168025

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene168025
CACGCCTCACTGGGGAAAGAACCGCAACATTGCATTCCATGGCGTTATGGAAAAGTACTCGGAGTCTAAATACAGTGAATTCATTAAAGCAAAACACAAATATGACCCAGAGGGCCTGTTTTCCAACGACTGGACAGATGCTCTGCTGCAAATTGGAAATTCGAGCGTGGTGCTGGATAAGGATGCCTGTGCTCTCGAGGGCCTGTGCCTGTGTCGCGAAGATAGGCATTGTGC

Ace file of the UniGene sp_v3.0_unigene168025

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D-arabinono-1,4-lactone oxidase-like protein n=3 Tax=Arabidopsis RepID=O81030_ARATH	-	-	1.0e-19	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	At2g46740; At2g46750; At2g46760; At5g56490; Os02g0124400; Os08g0114300; OsI_05664; OsI_27592; OsJ_05196; OsJ_25816; P0427G12.16;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	D-arabinono-1,4-lactone oxidase activity	GO:0003885	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46750.1	D-arabinono-1,4-lactone oxidase family protein chr2:19208443-19210909 REVERSE LENGTH=591	6.0e-26	59%
RefSeq	Arabidopsis thaliana	NP_182198.2	D-arabinono-1,4-lactone oxidase-like protein [Arabidopsis thaliana]	8.0e-26	59%
RefSeq	Populus trichocarpa	XP_002302668.1	predicted protein [Populus trichocarpa]	2.0e-22	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAQ1

Fln msg: Distance to subject end: 76 aas, your sequence is shorter than subject: 77 - 363

Fln protein: TPHWGKNRNIAFHGVMEKYSESKYSEFIKAKHKYDPEGLFSNDWTDALLQIGNSSVVLDKDACALEGLCLCREDRHC

Protein Length: 78

Fln nts: CACGCCTCACTGGGGAAAGAACCGCAACATTGCATTCCATGGCGTTATGGAAAAGTACTCGGAGTCTAAATACAGTGAATTCATTAAAGCAAAACACAAATATGACCCAGAGGGCCTGTTTTCCAACGACTGGACAGATGCTCTGCTGCAAATTGGAAATTCGAGCGTGGTGCTGGATAAGGATGCCTGTGCTCTCGAGGGCCTGTGCCTGTGTCGCGAAGATAGGCATTGTGC

Fln Alignment:

HIF1XHV03FWMU2___PHWGKNRNIAFHGVMEKYSESKYSEFIKAKHKYDPEGLFSNDWTDALLQIGNSSVVLDKDACALEGLCLCREDRHC
D5AAQ1________________PHWGKNRNLAFDGVLKKYN--KYEAFLQVKSKYDPQGLFSNEWTDGVLEIGQVGVIIKKDGCALEGLCVCSEDKHC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain