SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167947

Length: 162 nt

UniGene Fasta

>sp_v3.0_unigene167947
TGGGTTGTCTTGCCTCCATTGAAAGACCAGAATTGTTTGAAAGATTAGTCTTGCTCTGCGCTTCCCCAAGGTATCTGAACGATGGATCCTACCATGGGGGCTTCGAACGTGGGGAAGTTGATAGTTTTTACTGTGCAATGAAATCTCACTATGCAGCATGGG

Ace file of the UniGene sp_v3.0_unigene167947

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	hydrolase [Platanus x acerifolia]	-	-	3.0e-12	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	Gene names
Sma3	GSVIVT00014956001; OsI_18681;

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G03990.1	alpha/beta-Hydrolases superfamily protein chr3:1033788-1034591 FORWARD LENGTH=267	2.0e-17	56%
RefSeq	Arabidopsis thaliana	NP_566220.1	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	3.0e-17	56%
RefSeq	Populus trichocarpa	XP_002302409.1	predicted protein [Populus trichocarpa]	2.0e-17	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLT8

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 53 - 281

Fln protein: GCLASIERPELFERLVLLCASPRYLNDGSYHGGFERGEVDSFYCAMKSHYAAW

Protein Length: 54

Fln nts: TGGGTTGTCTTGCCTCCATTGAAAGACCAGAATTGTTTGAAAGATTAGTCTTGCTCTGCGCTTCCCCAAGGTATCTGAACGATGGATCCTACCATGGGGGCTTCGAACGTGGGGAAGTTGATAGTTTTTACTGTGCAATGAAATCTCACTATGCAGCATGGG

Fln Alignment:

HIF1XHV03FKUAW___GCLASIERPELFERLVLLCASPRYLNDGSYHGGFERGEVDSFYCAMKSHYAAW
A9NLT8________________GCLASIERPELFERLILLCASPRYLNDESYHGGFERGEIDRLYCAMKSDYAAW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain