SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167847

Length: 215 nt

UniGene Fasta

>sp_v3.0_unigene167847
CGGATCGCAGACGCAAAGCTTAAATTTTGAGCATTTGGGTAGCTTAAGCTGCCGCGCATCTGAACTGGGTTGTTCTTGGATTCCTTCGCCATCAATACTTGCTCTCTCCCGTCAAAAACTCCCACATCTTGCCGGTTCTTCAATAGAGGGTGTTGAGAAGGGAGGCTACATTATCAGTGACAATTCCTCTGGCAACAAGCCTGATGTCATTCTTA

Ace file of the UniGene sp_v3.0_unigene167847

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transketolase-like protein n=9 Tax=core eudicotyledons RepID=Q9LZY8_ARATH	-	-	1.0e-13	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	TK	-	-	3.924e-23	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transketolase.	EC:2.2.1.1	-	1.433e-23	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose phosphate pathway	00030	1.433e-23	%
Sma3	Carbon fixation in photosynthetic organisms	00710	1.433e-23	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.433e-23	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	1.433e-23	%
Sma3	Biosynthesis of plant hormones	01070	1.433e-23	%
Sma3	Metabolic pathways	01100	1.433e-23	%
Sma3	Biosynthesis of secondary metabolites	01110	1.433e-23	%

Source	Gene names
Sma3	134P10.11; AT3G60750; At2g45290; At3g60750; GSVIVT00026404001; GSVIVT00038435001; OSIGBa0139I12.3; OSJNBa0072D08.7; Os04g0266900; Os06g0133800; OsI_15126; OsI_15128; OsI_21507; OsJ_14067; OsJ_20020; P0001H02.3; P0679C08.41; PHYPADRAFT_107024; PHYPADRAFT_2

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	transketolase activity	GO:0004802	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	pentose-phosphate shunt, oxidative branch	GO:0009051	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase, bacterial-like	IPR005478	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G60750.1	Transketolase chr3:22454004-22456824 FORWARD LENGTH=741	3.0e-18	67%
RefSeq	Arabidopsis thaliana	NP_001190145.1	Transketolase [Arabidopsis thaliana]	4.0e-18	67%
RefSeq	Populus trichocarpa	XP_002320056.1	predicted protein [Populus trichocarpa]	3.0e-18	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNE5

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 71 - 224

Fln protein: GSQTQSLNFEHLGSLSCRASELGCSWIPSPSILALSRQKLPHLAGSSIEGVEKGGYIISDNSSGNKPDVIL

Protein Length: 72

Fln nts: CGGATCGCAGACGCAAAGCTTAAATTTTGAGCATTTGGGTAGCTTAAGCTGCCGCGCATCTGAACTGGGTTGTTCTTGGATTCCTTCGCCATCAATACTTGCTCTCTCCCGTCAAAAACTCCCACATCTTGCCGGTTCTTCAATAGAGGGTGTTGAGAAGGGAGGCTACATTATCAGTGACAATTCCTCTGGCAACAAGCCTGATGTCATTCTTA

Fln Alignment:

HIF1XHV03HAK6Q___PSILALSRQKLPHLAGSSIEGVEKGGYIISDNSSGNKPDVIL
A9NNE5________________PSILALSRQKLPHLAGSSIEGVEKGGYTISCNASNNKPDVIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain