SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167813

Length: 123 nt

UniGene Fasta

>sp_v3.0_unigene167813
TTAAGCTCATTGGCACTGGTCTTTGCACTTCATCATTATAAACCTACTCCATTGTATGTTATGGATGAGATTGATGCTGCTTTAGATTTTAAGAATGTCTCGATAGTGGGCCACTACATCAAG

Ace file of the UniGene sp_v3.0_unigene167813

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative SMC protein (ISS) (Fragment) n=1 Tax=Ostreococcus tauri RepID=Q017K9_OSTTA	-	-	1.0e-15	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Structural maintenance of chromosomes protein 4	-	-	2.304e-09	-

Source	Gene names
Sma3	At5g48600; CAP-C; CHLREDRAFT_122088; CPC1501; CPC901; GSVIVT00011148001; GSVIVT00020955001; K15N18.7; MICPUCDRAFT_33825; MICPUN_56721; OJ1118_C04.7; OSTLU_242; OsI_20464; OsI_20467; OsJ_19059; Ot06g01430; PHATR_44165; PHYPADRAFT_111974; POPTRDRAFT_577636;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	chromosome organization	GO:0051276	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	RecF/RecN/SMC	IPR003395	-	0.0	-
Sma3	SMCs flexible hinge	IPR010935	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48600.2	SMC3 structural maintenance of chromosome 3 chr5:19701908-19709091 FORWARD LENGTH=1244	6.0e-21	97%
RefSeq	Arabidopsis thaliana	NP_199671.1	structural maintenance of chromosomes protein 4 [Arabidopsis thaliana]	8.0e-21	97%
RefSeq	Populus trichocarpa	XP_002323859.1	condensin complex components subunit [Populus trichocarpa]	8.0e-21	97%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9A1

Fln msg: Distance to subject end: 51 aas, your sequence is shorter than subject: 41 - 295

Fln protein: LSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYIK

Protein Length: 42

Fln nts: TTAAGCTCATTGGCACTGGTCTTTGCACTTCATCATTATAAACCTACTCCATTGTATGTTATGGATGAGATTGATGCTGCTTTAGATTTTAAGAATGTCTCGATAGTGGGCCACTACATCAAG

Fln Alignment:

HIF1XHV03GB1MA___LSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYIK
D5A9A1________________LSSLALVFALHHYKPTPLYVMDEIDASLDFKNVSIVGHYIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain