SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167701

Length: 241 nt

UniGene Fasta

>sp_v3.0_unigene167701
GAAAAAGTCATGGAGGTCAAGGGCGATGGTAAGAAGAGAAAGCTGGACGAGGAAGCCAATGGCGGCGCTCTGCAACTCTCGAAGGACGATCTGCACTCGCTGTTGGAGCCACTAAGCAAAGAGCAGTTGATCTCTTTGCTGGTCAATGCAGGTTCTTCATACCCTGCAATTGCAGAAGAAATTAAAGATGTTGCAAGCAAGGACCCTGACTCATCGGAAGCTGTTTAGTGCGTGGATTGGC

Ace file of the UniGene sp_v3.0_unigene167701

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	Gene names
Sma3	GSVIVT00025362001; POPTRDRAFT_576277; VITISV_031367;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002322674.1	predicted protein [Populus trichocarpa]	1.0e-14	57%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 288 aas, your sequence is shorter than subject: 73 - 365

Fln protein: MEVKGDGKKRKLDEEANGGALQLSKDDLHSLLEPLSKEQLISLLVNAGSSYPAIAEEIKDVASKDPDSSEAV*

Protein Length: 74

Fln nts: GAAAAAGTC_-_ATGGAGGTCAAGGGCGATGGTAAGAAGAGAAAGCTGGACGAGGAAGCCAATGGCGGCGCTCTGCAACTCTCGAAGGACGATCTGCACTCGCTGTTGGAGCCACTAAGCAAAGAGCAGTTGATCTCTTTGCTGGTCAATGCAGGTTCTTCATACCCTGCAATTGCAGAAGAAATTAAAGATGTTGCAAGCAAGGACCCTGACTCATCGGAAGCTGTTTAGTGCGTGGATTGGC

Fln Alignment:

HIF1XHV01AXDV1___MEVKGDGKKRKLDEEANGGALQLSKDDLHSLLEPLSKEQLISLLVNAGSSYPAIAEEIKDVASKDP
A9NUP9________________MEHKGDGKKRKLDEEANGAALQLSKDHLHSLLEPLSKEQLISLLVDAGSSYPAIAEEIKDVASKDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain