SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167693

Length: 184 nt

UniGene Fasta

>sp_v3.0_unigene167693
GCATTCCCTAATGGTCCATTCTATCAAACGTATCAGCCTCGCTGGGATGCATGGGGAAGGTTCATGGAGCCACTGGTTTCACGAGTGCCTATGATGGTATTGGCGGGAAATCATGACATAGAAACTCAAGGTGGAGGCGTCCAATTTGCATCTTACAAAGCGAGGTTTGCTGTCCCATCTAAGG

Ace file of the UniGene sp_v3.0_unigene167693

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotide pyrophosphatase/phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9RWM5_RICCO	-	-	2.0e-19	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	Phytase	-	-	4.78e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	1.505e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		1.505e-11	%
Sma3	Riboflavin metabolism	00740		1.505e-11	%

Source	Gene names
Sma3	AT3; At4g13700; F18A5.90; GSVIVT00011763001; GSVIVT00020463001; LOC_Os03g63074; OSJNBb0043P23.2; OSJNBb0096M04.130; Os03g0848200; Os08g0280100; OsI_14321; OsI_28582; OsI_28583; OsJ_13361; OsJ_26722; P0026A08.24; PAP; PAP23; PHYPADRAFT_153950; PHYPADRAFT_1

Source	GOs	Term	Type	Identity
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Orn/Lys/Arg decarboxylase, major domain	IPR000310	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Orn/Lys/Arg decarboxylase, C-terminal	IPR008286	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G13700.1	ATPAP23, PAP23 purple acid phosphatase 23 chr4:7957072-7958919 REVERSE LENGTH=458	3.0e-24	65%
RefSeq	Arabidopsis thaliana	NP_193106.3	purple acid phosphatase 23 [Arabidopsis thaliana]	4.0e-24	65%
RefSeq	Populus trichocarpa	XP_002303047.1	predicted protein [Populus trichocarpa]	4.0e-24	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVR5

Fln msg: Distance to subject end: 226 aas, your sequence is shorter than subject: 61 - 517

Fln protein: AFPNGPFYQTYQPRWDAWGRFMEPLVSRVPMMVLAGNHDIETQGGGVQFASYKARFAVPSK

Protein Length: 62

Fln nts: GCATTCCCTAATGGTCCATTCTATCAAACGTATCAGCCTCGCTGGGATGCATGGGGAAGGTTCATGGAGCCACTGGTTTCACGAGTGCCTATGATGGTATTGGCGGGAAATCATGACATAGAAACTCAAGGTGGAGGCGTCCAATTTGCATCTTACAAAGCGAGGTTTGCTGTCCCATCTAAGG

Fln Alignment:

HIF1XHV01B7J39___RWDAWGRFMEPLVSRVPMMVLAGNHDIETQ---GGGVQFASYKARFAVP
A9NVR5________________RWDTWGRFIEPSAAYQPWIWTAGNHEIEFRPKLGKTIPFEPYLHRYQVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain