SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167669

Length: 175 nt

UniGene Fasta

>sp_v3.0_unigene167669
TTGTTCAAGAAAGTTGTTGGTAAGCTACTCCTATGTGGCCATCTGGATCTTCCTCAGCTTCACTGTCATTGTATTTAACAAATACATTCTGGACAAGAGTATGTACAATTGGCCATTCCCTATCAGTCTCACCATGATTCACATGGGCTTCTGCTCAGCACTGGCTGTTGCCATT

Ace file of the UniGene sp_v3.0_unigene167669

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative phosphate/phosphoenolpyruvate translocator protein [Arabidopsis thaliana] sp\|Q9SKJ7.1\|PT225_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At2g25520 gb\|AAD20711.1\| putative phosphate/phosphoenolpyruvate translocator protein [	-	-	2.0e-21	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Plastidic phosphate translocator-like protein1	-	-	1.451e-11	-

Source	Gene names
Sma3	AT4g32390; At2g25520; At4g32390; At5g11230; At5g25400; F2I11_120; F8B4.90; GSVIVT00016883001; GSVIVT00032633001; LOC_Os10g34490; LOC_Os11g04380; LOC_Os12g04170; OJ1579_G03.4; OSJNBa0029C15.18; Os05g0494500; Os11g0139400; Os12g0136100; OsI_04109; OsI_12657

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Basic leucine zipper	IPR011700	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25520.1	Drug/metabolite transporter superfamily protein chr2:10860950-10861993 FORWARD LENGTH=347	2.0e-28	80%
RefSeq	Arabidopsis thaliana	NP_180122.1	putative phosphate/phosphoenolpyruvate translocator protein [Arabidopsis thaliana]	3.0e-28	80%
RefSeq	Populus trichocarpa	XP_002309616.1	predicted protein [Populus trichocarpa]	2.0e-27	78%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQV0

Fln msg: Distance to subject end: 284 aas, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 58 - 357

Fln protein: CSRKLLVSYSYVAIWIFLSFTVIVFNKYILDKSMYNWPFPISLTMIHMGFCSALAVAI

Protein Length: 59

Fln nts: TTGTTCAAGAAAGTTGTTGGTAAGCTACTCCTATGTGGCCATCTGGATCTTCCTCAGCTTCACTGTCATTGTATTTAACAAATACATTCTGGACAAGAGTATGTACAATTGGCCATTCCCTATCAGTCTCACCATGATTCACATGGGCTTCTGCTCAGCACTGGCTGTTGCCATT

Fln Alignment:

HIF1XHV01A9QD7___RKLLVSYSYVAIWIFLSFTVIVFNKYILDKSMYNWPFPISLTMIHMGFCSALAVAI
B8LQV0________________KKIVLSYTYVSIWIFLSFSVIVFNKYILDRKMYNWPFPISLTMIHMAFCSFLAVLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain