SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167645

Length: 212 nt

UniGene Fasta

>sp_v3.0_unigene167645
ACCCTACTGTGGACATGGCGTCAGATTATGCAGATGACTACACACACTTACCGGGTTATGGAATCATTCGAGATGCTAGCAGGGAGAGTGCCGAAATGGATATCAATCAGCCAAAGCGAACATTGTTACAGGATATTAATAGGCATGCAGCAGTTGTTCTTGAAGGGCAGGCTCTAGATTCTGACTCGGGAGATACAAGGTCTGTAGCAGAA

Ace file of the UniGene sp_v3.0_unigene167645

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription initiation factor TFIIH subunit H1 [Arabidopsis thaliana] sp\|Q3ECP0.1\|TFB1A_ARATH RecName: Full=Probable RNA polymerase II transcription factor B subunit 1-1; AltName: Full=General transcription and DNA repair factor IIH subunit TFB1-1; Shor	-	-	3.0e-15	58%
FL-Next	sp=Probable RNA polymerase II transcription factor B subunit 1-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%

Source	Gene names
Sma3	At1g55750; At3g61420; F2A19.20; GSVIVT00033473001; Os08g0338200; OsI_28861; OsJ_26954; P0702G08.11; PHYPADRAFT_152192; POPTRDRAFT_859640; RCOM_0267720; VITISV_026261;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BSD	IPR005607	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G55750.1	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) chr1:20840449-20845135 REVERSE LENGTH=591	5.0e-20	58%
RefSeq	Arabidopsis thaliana	NP_175971.3	transcription initiation factor TFIIH subunit H1 [Arabidopsis thaliana]	6.0e-20	58%
RefSeq	Populus trichocarpa	XP_002307021.1	predicted protein [Populus trichocarpa]	5.0e-19	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q3ECP0

Fln msg: Distance to subject end: 239 aas, your sequence is shorter than subject: 70 - 591

Fln protein: PTVDMASDYADDYTHLPGYGIIRDASRESAEMDINQPKRTLLQDINRHAAVVLEGQALDSDSGDTRSVAE

Protein Length: 71

Fln nts: ACCCTACTGTGGACATGGCGTCAGATTATGCAGATGACTACACACACTTACCGGGTTATGGAATCATTCGAGATGCTAGCAGGGAGAGTGCCGAAATGGATATCAATCAGCCAAAGCGAACATTGTTACAGGATATTAATAGGCATGCAGCAGTTGTTCTTGAAGGGCAGGCTCTAGATTCTGACTCGGGAGATACAAGGTCTGTAGCAGAA

Fln Alignment:

HIF1XHV01BTMHT___PTVDMASDYADDYTHLPGYGIIRDASRESAEMDINQPKRTLLQDINRHAAVVLEGQALDSDSGDTRSVAE
Q3ECP0________________PTLDMEADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSLLQDLNRHAAVVLEGRSIDVESEDTRIVAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain