SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167589

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene167589
CCACTTCAATTGCTTACATTTTCCAGCTTTGCCTGCATCAATTTTATGCCTAACAGGTGCAGGTGATTGCTTTGTGGGTGGTACCCTTGCAGCTCTTTGTGTTGGAAAGGACATAATAGAAAGTATGGCTTTTGGTGTGGCGGTAGCAAAGCGGGCAGTTGAATCTGAACTGAATGTACCTTCTCATTTATCTCTAACTATGGTTTCAGATGATGCGAAGACTGTCCT

Ace file of the UniGene sp_v3.0_unigene167589

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Carbohydrate kinase, PfkB [Medicago truncatula]	-	-	6.0e-18	59%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	58%

Source	Gene names
Sma3	At1g49350; GSVIVT00035982001; MtrDRAFT_AC147481g10v2; PHYPADRAFT_214732; POPTRDRAFT_195342; POPTRDRAFT_195347; RCOM_0937540; VITISV_035585;

Source	GOs	Term	Type	Identity
Sma3	ribokinase activity	GO:0004747	Molecular Function	-
Sma3	D-ribose metabolic process	GO:0006014	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Ribokinase	IPR002139	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	TB2/DP1/HVA22-related protein	IPR004345	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G49350.1	pfkB-like carbohydrate kinase family protein chr1:18265070-18267034 FORWARD LENGTH=378	3.0e-20	54%
RefSeq	Arabidopsis thaliana	NP_564543.1	pfkB-type carbohydrate kinase-like protein [Arabidopsis thaliana]	4.0e-20	54%
RefSeq	Populus trichocarpa	XP_002306088.1	predicted protein, partial [Populus trichocarpa]	2.0e-26	61%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: I1NDC7

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 75 - 413

Fln protein: HFNCLHFPALPASILCLTGAGDCFVGGTLAALCVGKDIIESMAFGVAVAKRAVESELNVPSHLSLTMVSDDAKTV

Protein Length: 76

Fln nts: CCACTTCAATTGCTTACATTTTCCAGCTTTGCCTGCATCAATTTTATGCCTAACAGGTGCAGGTGATTGCTTTGTGGGTGGTACCCTTGCAGCTCTTTGTGTTGGAAAGGACATAATAGAAAGTATGGCTTTTGGTGTGGCGGTAGCAAAGCGGGCAGTTGAATCTGAACTGAATGTACCTTCTCATTTATCTCTAACTATGGTTTCAGATGATGCGAAGACTGTCCT

Fln Alignment:

HIF1XHV01BZ7I5___HFNCLHFPALPASILCLTGAGDCFVGGTLAALCVGKDIIESMAFGVAVAKRAVESELNVPSHLSLTMVSDDAKTV
I1NDC7________________HLFAVHFPSLPASVVRLTGAGDCLVGGTLTSICAGLDIMQSVSVGIAVAKAVVEVEANVPSTFSLSAITDDAKSV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain