SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167581

Length: 97 nt

UniGene Fasta

>sp_v3.0_unigene167581
ATGCATCTGATGCAGAATTGATTGCAGAGCAAGAAATTTGGGCTGCCACAGATCCTTATGCCAAGAACCAGGCCTTTAATTGTGCCAATGGAGATGT

Ace file of the UniGene sp_v3.0_unigene167581

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Progesterone 5-beta-reductase	-	-	2.36e-07	-

Source	Gene names
Sma3	AT4G24220; AT4g24220; At4g24220; At4g24220/T22A6.50; GSVIVT00007733001; LOC_Os03g32170; MtrDRAFT_AC158501g32v2; Nt-5beta-POR-A; Nt-5beta-POR-B; OSJNBb0013C14.21; OSJNBb0034P05.1; Os03g0436400; OsI_12184; OsJ_11392; POPTRDRAFT_644065; POPTRDRAFT_677926; RC

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24220.1	VEP1, AWI31 NAD(P)-binding Rossmann-fold superfamily protein chr4:12565219-12566474 FORWARD LENGTH=388	6.0e-12	80%
RefSeq	Arabidopsis thaliana	NP_001078438.1	WcaG domain-containing protein [Arabidopsis thaliana]	8.0e-12	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM29

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 31 - 399

Fln protein: ASDAELIAEQEIWAATDPYAKNQAFNCANGD

Protein Length: 32

Fln nts: ATGCATCTGATGCAGAATTGATTGCAGAGCAAGAAATTTGGGCTGCCACAGATCCTTATGCCAAGAACCAGGCCTTTAATTGTGCCAATGGAGATGT

Fln Alignment:

HIF1XHV01BI3ZZ___ASDAELIAEQEIWAATDPYAKNQAFNCANGD
B8LM29________________ASDAELIAEQEIWAATDPYAKNQAFNCSNGD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain