SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167543

Length: 161 nt

UniGene Fasta

>sp_v3.0_unigene167543
AACCATCTTTAGTCTCACCTATATCATTATTACTCTCGGGTTATGCATAAGAGATGGTCAGAATAGGCCGGCAAGAGACTACGGAATTTCAGGTTCAACGACCAGCAAAGTTTTTAAGACAATTGGTGCTGCAGCCTAATCTTGTTTTCTCATATAATAGC

Ace file of the UniGene sp_v3.0_unigene167543

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proline transporter n=2 Tax=Populus trichocarpa RepID=B9HT23_POPTR	-	-	7.0e-07	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002316242.1	proline transporter [Populus trichocarpa]	7.0e-11	55%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P182

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas, your sequence is shorter than subject: 46 - 247

Fln protein: TIFSLTYIIITLGLCIRDGQNRPARDYGISGSTTSKVFKTIGAAA*

Protein Length: 47

Fln nts: AACCATCTTTAGTCTCACCTATATCATTATTACTCTCGGGTTATGCATAAGAGATGGTCAGAATAGGCCGGCAAGAGACTACGGAATTTCAGGTTCAACGACCAGCAAAGTTTTTAAGACAATTGGTGCTGCAGCCTAA___TCTTGTTTTCTCATATAATAGC

Fln Alignment:

HIF1XHV01BFTT6___TIFSLTYIIITLGLCIRDGQNRPARDYGISGSTTSKVFKTIGAAA
A9P182________________TLLSLIYIIVTIVLSIKDGFNNSSRDYEIPGSKTTKFFSSIGAAA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain