SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167529

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene167529
GGAATATAAAGGGCATGCCGACAATTATATATGCTATCTTCTGCCTGGAACACCCTCTTCACATGCTAAATATACTCCAGGAGGACTTCTTTACACGTTGCAGGATACTAATTTGCAATACGTTACATCGTCTTCCTTCTTGCTCTTGACATATGCAAAATACTTGAGCTCCTCCAAGCAAGTAGTATCTTGTGGTGGGACAATGACAGTCACTCCTCACAGGCTAAGAACACTTGCAAAACGCCAGG

Ace file of the UniGene sp_v3.0_unigene167529

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endo-beta-1,4-glucanase n=1 Tax=Pinus radiata RepID=O64401_PINRA	-	-	2.0e-29	79%
FL-Next	tr=Endo-beta-1,4-glucanase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	79%
Sma3	Endo-1,4-beta-glucanase	-	-	9.106e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cellulase.	EC:3.2.1.4	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At1g02800; At1g22880; At4g02290; B1011A07.26; CEL1; CEL2; CEL5; CcCel2; Cel1; Cel4; Cel5; Cel7; Cel9; EGL1; EGL2; F19G10.16; F22D16.21; GLU12; GLU14; GLU8; GSVIVT00000510001; GSVIVT00028035001; LOC_Os01g21070; LOC_Os02g03120; LOC_Os09g36060; OJ1531_B07.26

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cellulase activity	GO:0008810	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	pattern specification process	GO:0007389	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	fruit ripening	GO:0009835	Biological Process	-
Sma3	cellulose catabolic process	GO:0030245	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02290.1	AtGH9B13, GH9B13 glycosyl hydrolase 9B13 chr4:1002654-1005125 REVERSE LENGTH=516	1.0e-32	67%
RefSeq	Arabidopsis thaliana	NP_192138.1	endoglucanase 17 [Arabidopsis thaliana]	2.0e-32	67%
RefSeq	Populus trichocarpa	XP_002301487.1	glycosyl hydrolase family 9 [Populus trichocarpa]	1.0e-34	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: O64401

Fln msg: Distance to subject end: 109 aas, your sequence is shorter than subject: 82 - 510

Fln protein: EYKGHADNYICYLLPGTPSSHAKYTPGGLLYTLQDTNLQYVTSSSFLLLTYAKYLSSSKQVVSCGGTMTVTPHRLRTLAKRQ

Protein Length: 83

Fln nts: GGAATATAAAGGGCATGCCGACAATTATATATGCTATCTTCTGCCTGGAACACCCTCTTCACATGCTAAATATACTCCAGGAGGACTTCTTTACACGTTGCAGGATACTAATTTGCAATACGTTACATCGTCTTCCTTCTTGCTCTTGACATATGCAAAATACTTGAGCTCCTCCAAGCAAGTAGTATCTTGTGGTGGGACAATGACAGTCACTCCTCACAGGCTAAGAACACTTGCAAAACGCCAGG

Fln Alignment:

HIF1XHV01BXN6U___EYKGHADNYICYLLPGTPSSHAKYTPGGLLYTLQDTNLQYVTSSSFLLLTYAKYLSSSKQVVSCGGTMTVTPHRLRTLAKRQ
O64401________________DYKGHADNYICSLLPGVSYSQAKYTPGGLLYTLSDSNLQYVTSSSFLLFTYAKYLSSSKHVVTC-GSMTFSPKRLRTIAKRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain