SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167522

Length: 195 nt

UniGene Fasta

>sp_v3.0_unigene167522
ACTCAGACTTCTAGGGACAAGGAGAAGGAGGCGGGTGATTATTATGTTCCCGCCGGTGGCATTTACAGAAATGCCCATGCATTTTATCGGAGTTATAGGGAAATGGAGAAGCATTTTAAGATATTTGTGTATCCAGAGGGTGAACCGCCTTTGGCACACGACGGGCCGTGTAAGAATATTTATACGACTGAAGGC

Ace file of the UniGene sp_v3.0_unigene167522

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os07g0188700 protein n=3 Tax=Oryza sativa RepID=Q6Z4E7_ORYSJ	-	-	2.0e-16	72%
FL-Next	sp=Probable glycosyltransferase At5g03795; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	Catalytic, putative	-	-	2.401e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-	EC:2.4.1.224	-	9.442e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycosaminoglycan biosynthesis - heparan sulfate	00534		9.442e-16	%
Sma3	Metabolic pathways	01100		9.442e-16	%

Source	Gene names
Sma3	At3g07620; GSVIVT00029053001; GSVIVT00029054001; GSVIVT00032681001; H0201G08.5; MLP3.7; OSJNBa0027H06.12; OSJNBb0002L09.8-1; OSJNBb0002L09.8-3; OSJNBb0084L07.20-1; OSJNBb0084L07.20-3; Os04g0109900; Os07g0188700; OsI_08049; OsI_14593; OsI_21883; OsI_25187;

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-
Sma3	transferase activity	GO:0016740	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exostosin-like	IPR004263	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G03795.1	Exostosin family protein chr5:1007554-1010373 REVERSE LENGTH=518	1.0e-19	70%
RefSeq	Arabidopsis thaliana	NP_001031828.1	putative glycosyltransferase [Arabidopsis thaliana]	1.0e-19	70%
RefSeq	Populus trichocarpa	XP_002320537.1	predicted protein [Populus trichocarpa]	7.0e-18	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FFN2

Fln msg: Distance to subject end: 302 aas, your sequence is shorter than subject: 65 - 518

Fln protein: TQTSRDKEKEAGDYYVPAGGIYRNAHAFYRSYREMEKHFKIFVYPEGEPPLAHDGPCKNIYTTEG

Protein Length: 66

Fln nts: ACTCAGACTTCTAGGGACAAGGAGAAGGAGGCGGGTGATTATTATGTTCCCGCCGGTGGCATTTACAGAAATGCCCATGCATTTTATCGGAGTTATAGGGAAATGGAGAAGCATTTTAAGATATTTGTGTATCCAGAGGGTGAACCGCCTTTGGCACACGACGGGCCGTGTAAGAATATTTATACGACTGAAGGC

Fln Alignment:

HIF1XHV01BYEHI___YVPAGGIYRNAHAFYRSYREMEKHFKIFVYPEGEPPLAHDGPCKNIYTTEG
Q9FFN2________________YVPLGPMYWNAKVFHRSYLEMEKQFKIYVYKEGEPPLFHDGPCKSIYSMEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain