SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167498

Length: 205 nt

UniGene Fasta

>sp_v3.0_unigene167498
CATCATTTTGGCAGCAGAAGCACTCAAAGGAATCTATACCACATACAGTAATGAAGATGCGTTGAAGTTACCATATTGTATTATTATTACCGGAGTTGCTTGTATTATTTTTGCATTTAGTATTCCACATTTGTCAGCTTTAAGGTTGTGGTTAGGCATTTCAACTCTCCTTAGCCTAATCTACATCATAGTTGTTGTTGTTTTA

Ace file of the UniGene sp_v3.0_unigene167498

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proline transporter n=1 Tax=Elaeis guineensis RepID=F2Z8K2_ELAGV	-	-	6.0e-14	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Proline transporter	-	-	1.797e-11	-

Source	Gene names
Sma3	AapA; At2g36590; At2g39890; At3g55740; B1026C12.12; F1I16_150; GSVIVT00018303001; HvProT; LOC_Os03g44230; OSJNBa0038E17.23; Os03g0644400; Os07g0100800; OsI_12791; OsI_24564; OsJ_11879; OsJ_22765; OsproT; POPTRDRAFT_803283; POPTRDRAFT_805469; ProT1; ProT2;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	L-proline transmembrane transporter activity	GO:0015193	Molecular Function	-
Sma3	proline transport	GO:0015824	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55740.1	PROT2, ATPROT2 proline transporter 2 chr3:20695786-20698157 FORWARD LENGTH=439	2.0e-13	55%
RefSeq	Arabidopsis thaliana	NP_974444.1	proline transporter 2 [Arabidopsis thaliana]	2.0e-13	55%
RefSeq	Populus trichocarpa	XP_002316242.1	proline transporter [Populus trichocarpa]	1.0e-15	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P182

Fln msg: Distance to subject end: 48 aas, your sequence is shorter than subject: 68 - 247

Fln protein: IILAAEALKGIYTTYSNEDALKLPYCIIITGVACIIFAFSIPHLSALRLWLGISTLLSLIYIIVVVVL

Protein Length: 69

Fln nts: CATCATTTTGGCAGCAGAAGCACTCAAAGGAATCTATACCACATACAGTAATGAAGATGCGTTGAAGTTACCATATTGTATTATTATTACCGGAGTTGCTTGTATTATTTTTGCATTTAGTATTCCACATTTGTCAGCTTTAAGGTTGTGGTTAGGCATTTCAACTCTCCTTAGCCTAATCTACATCATAGTTGTTGTTGTTTTA

Fln Alignment:

HIF1XHV01BE51M___IILAAEALKGIYTTYSNEDALKLPYCIIITGVACIIFAFSIPHLSALRLWLG
A9P182________________IILAGEAMKAIYTFYDNEGILKLPYCITITGIVCGIFALSIPHLSALRLWLG

SSRs (tot: 1)

Start position	End position	Sequence	Length
191	202	GTT GTT GTT GTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain