SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167468

Length: 149 nt

UniGene Fasta

>sp_v3.0_unigene167468
GAATCCATGATTATTGTGCAGTACATCGAGGAGGTATGGGACAAGAATGCGCCAAAGCTCTTGCCCAAAGATCCATATGATCGAGCCATTGCCCGCTTCTGGACTGCCTTCATAGATGACAAGCTCCTTCAATGTCTGAGAGGAGTCTT

Ace file of the UniGene sp_v3.0_unigene167468

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable glutathione S-transferase n=1 Tax=Picea mariana RepID=O65056_PICMA	-	-	6.0e-17	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Probable glutathione S-transferase	-	-	6.153e-11	-

Source	Gene names
Sma3	GSTU2; GSVIVT00006642001; GSVIVT00028960001; LOC_Os10g38590; OSJNBa0034L04.10; OSJNBb0038A07.7; OsI_34422; OsJ_32235; PARC; Puga; Sb18; Sb52; VITISV_018426;

Source	GOs	Term	Type	Identity
Sma3	glutathione transferase activity	GO:0004364	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G10370.1	GST30, ATGSTU17, GST30B, ERD9 Glutathione S-transferase family protein chr1:3397274-3398273 REVERSE LENGTH=227	8.0e-16	58%
RefSeq	Arabidopsis thaliana	NP_172508.4	glutathione S-transferase [Arabidopsis thaliana]	1.0e-15	58%
RefSeq	Populus trichocarpa	XP_002332367.1	predicted protein [Populus trichocarpa]	2.0e-14	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2I2

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 49 - 239

Fln protein: ESMIIVQYIEEVWDKNAPKLLPKDPYDRAIARFWTAFIDDKLLQCLRGV

Protein Length: 50

Fln nts: GAATCCATGATTATTGTGCAGTACATCGAGGAGGTATGGGACAAGAATGCGCCAAAGCTCTTGCCCAAAGATCCATATGATCGAGCCATTGCCCGCTTCTGGACTGCCTTCATAGATGACAAGCTCCTTCAATGTCTGAGAGGAGTCTT

Fln Alignment:

HIF1XHV01ALS3X___ESMIIVQYIEEVWDKNAPKLLPKDPYDRAIARFWTAFIDDKLLQCLRGV
A9P2I2________________ESMIIVQYIEEAWDSKAPNLMPKDPYDRAIARFWAAFVDDKLLPCVRGV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain