SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167354

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene167354
CTTCAGCGCATTTGAAGAGCAGGAGGTCCGGTGATCAATTCCCGATCAGGCTTTCAAGCAAAAGACACATACATGTCGCAAGAGAAGGGCCGGCCACTGCCAAAATTTGGTGAGTGGGATGTGAATGACCCAGCTTCGGCAGAAGGATTCACCGTAATTTTTAACAAGGCGAGAGATGAAAAGAAGACAGGTGGTACTACTCGGATCCCAGGCGTTCCTGCAGAATCTCCTGCTAAAGATGATGACGC

Ace file of the UniGene sp_v3.0_unigene167354

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative nitrate-induced NOI protein n=1 Tax=Vicia faba RepID=E9RJK2_VICFA	-	-	7.0e-18	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	NOI, putative	-	-	1.583e-13	-

Source	Gene names
Sma3	75-1-127BAC12.1; At2g17660; At4g35655; At5g55850; At5g63270; GSVIVT00015899001; GSVIVT00020594001; GSVIVT00029075001; GSVIVT00033392001; H0714H04.8; OJ1124_G07.16; OSJNBa0058K23.20; Os04g0620600; Os09g0253000; OsI_08763; OsI_17454; OsI_22578; OsI_30557; O

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pathogenic type III effector avirulence factor Avr cleavage site	IPR008700	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55850.2	NOI RPM1-interacting protein 4 (RIN4) family protein chr5:22603617-22604951 FORWARD LENGTH=130	1.0e-23	68%
RefSeq	Arabidopsis thaliana	NP_001190552.1	RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]	8.0e-24	68%
RefSeq	Populus trichocarpa	XP_002316782.1	predicted protein [Populus trichocarpa]	6.0e-23	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9P6

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 58 - 86

Fln protein: MSQEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGTTRIPGVPAESPAKDDD

Protein Length: 59

Fln nts: CTTCAGCGCATTTGAAGAGCAGGAGGTCCGGTGATCAATTCCCGATCAGGCTTTCAAGCAAAAGACACATAC_-_ATGTCGCAAGAGAAGGGCCGGCCACTGCCAAAATTTGGTGAGTGGGATGTGAATGACCCAGCTTCGGCAGAAGGATTCACCGTAATTTTTAACAAGGCGAGAGATGAAAAGAAGACAGGTGGTACTACTCGGATCCCAGGCGTTCCTGCAGAATCTCCTGCTAAAGATGATGACGC

Fln Alignment:

HIF1XHV01BFXUD___MSQEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGTTRIPGVPAESPAKDDD
D5A9P6________________MSQEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGTTRIPGVPAESPAKDDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain